standards > reporting guideline > DOI:10.25504/FAIRsharing.89hcdg

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ready Patient Derived Xenograft Minimum Information

Abbreviation: PDX-MI


General Information
Patients-derived tumor xenograft (PDX) mouse models are an important oncology research platform to study tumor evolution, drug response and personalised medicine approaches. We identified critical attributes to accurately describe PDX production and usage and proposed the PDX-Minimum information (PDX-MI) standard, which defines the minimal information for describing the clinical attributes of a patient’s tumor, the processes of implantation and passaging of tumors in a host mouse strain, quality assurance methods, and the use PDX models in cancer research. PDX-MI standard is the result of the collaborative work from more than 50 worldwide experts over 30 worldwide institutions.

Homepage https://www.ncbi.nlm.nih.gov/pubmed/29092942

Developed in United Kingdom

Created in 2017

Knowledge Domains  BETA




How to cite this record FAIRsharing.org: PDX-MI; Patient Derived Xenograft Minimum Information; DOI: https://doi.org/10.25504/FAIRsharing.89hcdg; Last edited: Jan. 8, 2019, 1:30 p.m.; Last accessed: Mar 18 2019 6:13 p.m.


This record is maintained by nathalie_conte  ORCID

Record added: Dec. 22, 2017, 2:31 p.m.
Record updated: Jan. 2, 2018, 10:54 a.m. by The FAIRsharing Team.

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Support

General

contact form MTB PDX

Additional Information

Contact Terry Meehan   ORCID

Tools

    No tools defined


Schemas

No XSD schemas defined


Access / Retrieve Data

Conditions of Use





Publications

PDX-MI: Minimal Information for Patient-Derived Tumor Xenograft Models.

Meehan TF, Conte N, Goldstein T, Inghirami G, Murakami MA, Brabetz S, Gu Z, Wiser JA, Dunn P, Begley DA, Krupke DM, Bertotti A, Bruna A, Brush MH, Byrne AT, Caldas C, Christie AL, Clark DA, Dowst H, Dry JR, Doroshow JH, Duchamp O, Evrard YA, Ferretti S, Frese KK, Goodwin NC, Greenawalt D, Haendel MA, Hermans E, Houghton PJ, Jonkers J, Kemper K, Khor TO, Lewis MT, Lloyd KCK, Mason J, Medico E, Neuhauser SB, Olson JM, Peeper DS, Rueda OM, Seong JK, Trusolino L, Vinolo E, Wechsler-Reya RJ, Weinstock DM, Welm A, Weroha SJ, Amant F, Pfister SM, Kool M, Parkinson H, Butte AJ, Bult CJ.
Cancer Research 2017

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Related Standards

Reporting Guidelines

No guidelines defined

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No semantic standards defined

Models and Formats

No syntax standards defined

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined


Implementing Databases (1)
Patients-Derived tumor Xenograft Finder
PDX Finder is an open repository for the upload and storage of clinical, genomic and functional PDX data which provides a comprehensive global catalogue of PDX models available for researchers across distributed repository databases. Integrated views are provided for histopathological image data, molecular classification of tumors, host mouse strain metadata, tumor genomic data and metrics on tumor response to chemotherapeutics.

Implementing Policies

This record is not implemented by any policy.


Credit

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