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ready Ensembl Genomes

General Information
The Ensembl genome annotation system, developed jointly by the EBI and the Wellcome Trust Sanger Institute, has been used for the annotation, analysis and display of vertebrate genomes since 2000. Since 2009, the Ensembl site has been complemented by the creation of five new sites, for bacteria, protists, fungi, plants and invertebrate metazoa, enabling users to use a single collection of (interactive and programatic) interfaces for accessing and comparing genome-scale data from species of scientific interest from across the taxonomy.

Homepage http://ensemblgenomes.org/

Countries that developed this resource Austria , Belgium , Croatia , Czech Republic , Denmark , Finland , France , Germany , Greece , Hungary , Iceland , Israel , Italy , Lithuania , Luxembourg , Malta , Montenegro , Netherlands , Norway , Portugal , Republic of Ireland , Slovakia , Spain , Sweden , Switzerland , United Kingdom

Created in 2008





How to cite this record FAIRsharing.org: Ensembl Genomes; Ensembl Genomes; DOI: https://doi.org/10.25504/FAIRsharing.923a0p; Last edited: Feb. 5, 2020, 1:17 p.m.; Last accessed: Jun 03 2020 5:20 p.m.

Publication for citation  Ensembl Genomes 2020-enabling non-vertebrate genomic research. Howe KL,Contreras-Moreira B,De Silva N,Maslen G,Akanni W,Allen J,Alvarez-Jarreta J,Barba M,Bolser DM,Cambell L,Carbajo M,Chakiachvili M,Christensen M,Cummins C,Cuzick A,Davis P,Fexova S,Gall A,George N,Gil L,Gupta P,Hammond-Kosack KE,Haskell E,Hunt SE,Jaiswal P,Janacek SH,Kersey PJ,Langridge N,Maheswari U,Maurel T,McDowall MD,Moore B,Muffato M,Naamati G,Naithani S,Olson A,Papatheodorou I,Patricio M,Paulini M,Pedro H,Perry E,Preece J,Rosello M,Russell M,Sitnik V,Staines DM,Stein J,Tello-Ruiz MK,Trevanion SJ,Urban M,Wei S,Ware D,Williams G,Yates AD,Flicek P; Nucleic Acids Res ; 2019; 10.1093/nar/gkz890;


This record is maintained by ensembl_fair

Record added: March 13, 2017, 2:17 p.m.
Record updated: Feb. 5, 2020, 1:17 p.m. by The FAIRsharing Team.

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In Collections
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Support

General

FAQ FAQ
blog Ensembl Blog
support email Ensembl Genomes Helpdesk
online documentation Ensembl Genomes Documentation
twitter @ensemblgenomes

Additional Information

Contact Helpdesk


Access / Retrieve Data

Conditions of Use

Applies to: Data use

Data Access

browse http://ensemblgenomes.org/info/genomes
download http://ensemblgenomes.org/info/access/ftp
MySQL database access http://ensemblgenomes.org/info/access/mysql

REST Web Services

REST service http://ensemblgenomes.org/info/access/rest

Other Web Services

Ensembl Perl API http://ensemblgenomes.org/info/access/api


Publications

Ensembl Genomes 2016: more genomes, more complexity.

Kersey PJ,Allen JE,Armean I,Boddu S,Bolt BJ,Carvalho-Silva D,Christensen M,Davis P,Falin LJ,Grabmueller C,Humphrey J,Kerhornou A,Khobova J,Aranganathan NK,Langridge N,Lowy E,McDowall MD,Maheswari U,Nuhn M,Ong CK,Overduin B,Paulini M,Pedro H,Perry E,Spudich G,Tapanari E,Walts B,Williams G,Tello-Ruiz M,Stein J,Wei S,Ware D,Bolser DM,Howe KL,Kulesha E,Lawson D,Maslen G,Staines DM
Nucleic Acids Res 2015

View Paper (PubMed) View Publication

Ensembl Genomes 2020-enabling non-vertebrate genomic research.

Howe KL,Contreras-Moreira B,De Silva N,Maslen G,Akanni W,Allen J,Alvarez-Jarreta J,Barba M,Bolser DM,Cambell L,Carbajo M,Chakiachvili M,Christensen M,Cummins C,Cuzick A,Davis P,Fexova S,Gall A,George N,Gil L,Gupta P,Hammond-Kosack KE,Haskell E,Hunt SE,Jaiswal P,Janacek SH,Kersey PJ,Langridge N,Maheswari U,Maurel T,McDowall MD,Moore B,Muffato M,Naamati G,Naithani S,Olson A,Papatheodorou I,Patricio M,Paulini M,Pedro H,Perry E,Preece J,Rosello M,Russell M,Sitnik V,Staines DM,Stein J,Tello-Ruiz MK,Trevanion SJ,Urban M,Wei S,Ware D,Williams G,Yates AD,Flicek P
Nucleic Acids Res 2019

View Paper (PubMed) View Publication

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This record is not implemented by any policy.


Credit

Record Maintainer

Funds

Maintains

Grant Number(s)

  • 090548/B/09/Z (The Wellcome Trust Sanger Institute, The Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, UK)

  • 222886-2, Microme (European Commission FP7)

  • 228421, INFRAVEC (European Commission FP7)

  • 284496, transPLANT (European Commission FP7)

  • 41686 IPGA Gramene (U.S. National Science Foundation)

  • 42660, AllBio (European Commission FP7)

  • BB/F19793/1 (Biotechnology and Biological Sciences Research Council (BBSRC), UK)

  • BB/H531519/1 (Biotechnology and Biological Sciences Research Council (BBSRC), UK)

  • BB/I008071/1 (Biotechnology and Biological Sciences Research Council (BBSRC), UK)

  • BB/J00328X/1 (Biotechnology and Biological Sciences Research Council (BBSRC), UK)

  • BB/J017299/1 (Biotechnology and Biological Sciences Research Council (BBSRC), UK)

  • BB/KK020102/1 (Biotechnology and Biological Sciences Research Council (BBSRC), UK)

  • BB/M018458/1 (Biotechnology and Biological Sciences Research Council (BBSRC), UK)

  • OPPGD1491 (Bill and Melinda Gates Foundation, Seattle, Washington, USA)