PRIDE XML Format
Homepage http://www.ebi.ac.uk/pride/help/archive/submission/pridexml
Countries that developed this resource Austria , Belgium , Croatia , Czech Republic , Denmark , Finland , France , Germany , Greece , Hungary , Iceland , Israel , Italy , Lithuania , Luxembourg , Malta , Montenegro , Netherlands , Norway , Portugal , Republic of Ireland , Slovakia , Spain , Sweden , Switzerland , United Kingdom
Created in 2004
Taxonomic range
Knowledge Domains
Subjects
How to cite this record FAIRsharing.org: PRIDE XML Format; PRIDE XML Format; DOI: https://doi.org/10.25504/FAIRsharing.975659; Last edited: Feb. 6, 2020, 1:21 p.m.; Last accessed: Mar 02 2021 8:27 p.m.
Record updated: Feb. 6, 2020, 1:21 p.m. by The FAIRsharing Team.
PRIDE Inspector | https://github.com/PRIDE-Toolsuite/pride-inspector |
PRIDE Converter 2 | https://github.com/PRIDE-Toolsuite/pride-converter-2 |
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2016 update of the PRIDE database and its related tools.
Vizcaino JA,Csordas A,del-Toro N,Dianes JA,Griss J,Lavidas I,Mayer G,Perez-Riverol Y,Reisinger F,Ternent T,Xu QW,Wang R,Hermjakob H
Nucleic Acids Res 2015
ProteomeXchange provides globally coordinated proteomics data submission and dissemination.
Vizcaino JA,Deutsch EW,Wang R,Csordas A,Reisinger F,Rios D,Dianes JA,Sun Z,Farrah T,Bandeira N,Binz PA,Xenarios I,Eisenacher M,Mayer G,Gatto L,Campos A,Chalkley RJ,Kraus HJ,Albar JP,Martinez-Bartolome S,Apweiler R,Omenn GS,Martens L,Jones AR,Hermjakob H
Nat Biotechnol 2014
How to submit MS proteomics data to ProteomeXchange via the PRIDE database.
Ternent T,Csordas A,Qi D,Gomez-Baena G,Beynon RJ,Jones AR,Hermjakob H,Vizcaino JA
Proteomics 2014
Reporting Guidelines
No guidelines defined
Terminology Artifacts
Models and Formats
Identifier Schemas
No identifier schema standards defined
Metrics
No metrics standards defined
The PRIDE PRoteomics IDEntifications database is a centralized, standards compliant, public data repository that provides protein and peptide identifications together with supporting evidence.
ProteomeXchange
The ProteomeXchange consortium has been set up to provide a single point of submission of MS proteomics data to the main existing proteomics repositories, and to encourage the data exchange between them for optimal data dissemination.
iProX
iProX is a public platform for collecting and sharing raw data, analysis results and metadata obtained from proteomics experiments. The iProX repository employs a web-based proteome data submission process and open sharing of mass spectrometry-based proteomics datasets. iProX is a member of the ProteomeXchange (PX) consortium.
This record is not implemented by any policy.
Record Maintainer
Funds
Biotechnology and Biological Sciences Research Council (BBSRC), UK (Government body)
Engineering and Physical Sciences Research Council (EPSRC), UK (Government body)
The Wellcome Trust, UK (Charitable foundation)
Maintains
European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridgeshire, UK (Research institute) Lead
Grant Number(s)
BB/I00095X/1 (Biotechnology and Biological Sciences Research Council (BBSRC), UK)
BB/K01997X/1 (Biotechnology and Biological Sciences Research Council (BBSRC), UK)
BB/L024225/1 (Biotechnology and Biological Sciences Research Council (BBSRC), UK)
WT101477MA (The Wellcome Trust, UK)