The MGA Data Repository
Abbreviation:MGA
General Information
The Mass Genome Annotation (MGA) Data Repository stores published next generation sequencing data and other genome annotation data (such as gene start sites, SNPs, etc.) that, in conjunction with the ChIP-Seq and SSA servers, can be accessed and studied by scientists. The main characteristic of the MGA database is to store mapped data (in the form of genomic coordinates of mapped reads) and not sequence files. In this way, each sample present in the database has been pre-processed (for example sequence reads have been mapped to a genome) and presented in a standardized text format.
How to cite this record
FAIRsharing.org: MGA; The MGA Data Repository; DOI: https://doi.org/10.25504/FAIRsharing.9997ek;
Last edited: Oct. 22, 2019, 11:08 a.m.; Last accessed: Mar 04 2021 4:15 a.m.
Record added: Oct. 12, 2017, 3:48 p.m.
Record updated:
Oct. 22, 2019, 10:33 a.m. by pmeylan.
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Edits to 'https://fairsharing.org/FAIRsharing.9997ek' by 'pmeylan' at 10:33, 22 Oct 2019 (approved):
'homepage' has been modified:
Before: http://ccg.vital-it.ch/mga/
After: https://ccg.epfl.ch/mga/
'tools' has been modified:
Before:
ChIP-Seq|1.5.3|http://ccg.vital-it.ch/chipseq/
SSA|2.0|http://ccg.vital-it.ch/ssa/
After:
ChIP-Seq|1.5.4|https://ccg.epfl.ch/chipseq/
SSA|2.0|https://ccg.epfl.ch/ssa/
Added:
ChIP-Seq|1.5.4|https://ccg.epfl.ch/chipseq/
SSA|2.0|https://ccg.epfl.ch/ssa/
Removed:
ChIP-Seq|1.5.3|http://ccg.vital-it.ch/chipseq/
SSA|2.0|http://ccg.vital-it.ch/ssa/
'description' has been modified:
Before: The Mass Genome Annotation (MGA) Data Repository stores published next generation sequencing data and other genome annotation data (such as gene start sites, SNPs, etc.) that, in conjunction with the ChIP-Seq and SSA servers, can be accessed and studied by scientists. The main characteristic of the MGA database is to store mapped data (in the form of genomic coordinates of mapped reads) and not sequence files. In this way, each sample present in the database has been pre-processed (for example sequence reads has been mapped to a genome) and presented in a standardized text format
After: The Mass Genome Annotation (MGA) Data Repository stores published next generation sequencing data and other genome annotation data (such as gene start sites, SNPs, etc.) that, in conjunction with the ChIP-Seq and SSA servers, can be accessed and studied by scientists. The main characteristic of the MGA database is to store mapped data (in the form of genomic coordinates of mapped reads) and not sequence files. In this way, each sample present in the database has been pre-processed (for example sequence reads have been mapped to a genome) and presented in a standardized text format.
'miriam_id' has been modified:
Before: None
After:
Edits to 'https://fairsharing.org/FAIRsharing.9997ek' by 'The FAIRsharing Team' at 14:25, 16 Oct 2017 (approved):
'domains' has been modified:
Before:
Annotation|property|http://edamontology.org/operation_0226
Chromatin immunoprecipitation - DNA sequencing (ChIP-seq)||http://edamontology.org/topic_3169
MNase-seq|None|
Single nucleotide polymorphism (SNP)|None|http://purl.obolibrary.org/obo/SO_0000694
After:
Annotation|property|http://edamontology.org/operation_0226
Chromatin immunoprecipitation - DNA sequencing (ChIP-seq)||http://edamontology.org/topic_3169
Single nucleotide polymorphism (SNP)|None|http://purl.obolibrary.org/obo/SO_0000694
Added:
Removed:
MNase-seq|None|
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