standards > terminology artifact > DOI:10.25504/FAIRsharing.9c1p18


ready Dictyostelium Phenotype Ontology

Abbreviation: DDPHENO


General Information
A structured controlled vocabulary of phenotypes of the social amoeba Dictyostelium discoideum. The Dicty Phenotype Ontology is a hierarchical controlled vocabulary used for annotating strains with phenotypes. Terms from the Dicty Phenotype Ontology are required when annotating phenotypes within dictyBase. The phenotype ontology consists of two composite terms: (1) the anatomical part or the biological process changed in the mutant, and (2) a quality describing that modification. For example, a ‘delayed aggregation’ phenotype qualifies the ‘aggregation’ (biological process) as being ‘delayed’, or the ‘decreased spore size’ qualifies the ‘spore’ to be of ‘decreased size’.

Homepage https://github.com/dictyBase/migration-data/blob/master/ontologies/dicty_phenotypes.obo

Countries that developed this resource United States

Created in 2003

Knowledge Domains 

Subjects 




How to cite this record FAIRsharing.org: DDPHENO; Dictyostelium Phenotype Ontology; DOI: https://doi.org/10.25504/FAIRsharing.9c1p18; Last edited: Jan. 8, 2019, 1:37 p.m.; Last accessed: May 21 2019 2:20 a.m.


This record is maintained by pfey  ORCID

Record added: Oct. 24, 2017, 9:41 a.m.
Record updated: Feb. 20, 2018, 7:17 p.m. by The FAIRsharing Team.

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In Collections
OBO Foundry



Tools

    No tools defined


Schemas

No XSD schemas defined


Access / Retrieve Data

Conditions of Use


Data Curation

Data and Ontology Curation http://dictybase.org/SOPs/PhenotypeCuration.html



Publications

One stop shop for everything Dictyostelium: dictyBase and the Dicty Stock Center in 2012

Fey P, Dodson RJ, Basu S, Chisholm RL.
Methods Mol Bio 2012

View Paper (PubMed) View Publication

DDPHENO Ontology Display

View in BioPortal.


Disclaimer: This widget assumes the availability of the ontology resources in the NCBO BioPortal.

View in OBO Foundry.



Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

Models and Formats

No syntax standards defined

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined


Implementing Databases (2)
dictyBase
dictyBase is a single-access database for the complete genome sequence and expression data of four Dictyostelid species providing information on research, genome and annotations. There is also a repository of plasmids and strains held at the Dicty Stock Centre. Relevant literature is integrated into the database, and gene models and functional annotation are manually curated from experimental results and comparative multigenome analyses.
OBO Foundry
The Open Biological and Biomedical Ontology (OBO) Foundry is a collective of ontology developers that are committed to collaboration and adherence to shared principles. The mission of the OBO Foundry is to develop a family of interoperable ontologies that are both logically well-formed and scientifically accurate. To achieve this, OBO Foundry participants voluntarily adhere to and contribute to the development of an evolving set of principles including open use, collaborative development, non-overlapping and strictly-scoped content, and common syntax and relations, based on ontology models that work well, such as the Gene Ontology (GO). The OBO Foundry is overseen by an Operations Committee with Editorial, Technical and Outreach working groups.

Implementing Policies

This record is not implemented by any policy.


Credit

Record Maintainer

Funds

Maintains

Grant Number(s)

  • GM64426 (National Institute of General Medical Sciences (NIGMS), Bethesda, MD, USA)