standards > terminology artifact > DOI:10.25504/FAIRsharing.9c2azc


deprecated OBO ReLationship

Abbreviation: OBO_REL


General Information
This record was deprecated on March 22, 2016 for the following reason(s): This resource is obsolete and has been replaced by the OBO Relations Ontology (https://biosharing.org/bsg-000644).

This record describes the original relations ontology (ID space "OBO_REL"), which was a direct translation of the 2005 RO paper into OBO format. It suffered a number of problems, such as lack of clarity in the semantics of class level relations. The OBO Relations Ontology (RO) has replaced this resource, and a description of how the two resources differ can be found at https://github.com/oborel/obo-relations/wiki/DifferencesWithOldRO.


This record is replaced by:

Homepage http://purl.bioontology.org/ontology/OBO_REL

Countries that developed this resource United States

Created in 2005

Taxonomic range

User-defined Tags





How to cite this record FAIRsharing.org: OBO_REL; OBO ReLationship; DOI: https://doi.org/10.25504/FAIRsharing.9c2azc; Last edited: June 4, 2019, 3:24 p.m.; Last accessed: Jul 16 2019 5:16 p.m.


Record updated: June 4, 2019, 12:10 p.m. by The FAIRsharing Team.

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In Collections
OBO Foundry


Support

No support information provided.

Additional Information

Contact cjmungall@lbl.gov

External Links

Bioportal http://bioportal.bioontology.org/ontologies/OBOREL

Tools

    No tools defined


Schemas

No XSD schemas defined


Access / Retrieve Data

Conditions of Use





Publications

Relations in biomedical ontologies.

Smith B,Ceusters W,Klagges B,Kohler J,Kumar A,Lomax J,Mungall C,Neuhaus F,Rector AL,Rosse C
Genome Biol 2005

View Paper (PubMed) View Publication

OBOREL Ontology Display

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Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

Models and Formats

No syntax standards defined

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined


Implementing Databases (3)
Rat Genome Database
The Rat Genome Database is the premier site for genetic, genomic, phenotype, and disease data generated from rat research. It provides easy access to corresponding human and mouse data for cross-species comparison and its comprehensive data and innovative software tools make it a valuable resource for researchers worldwide.
Planteome
A resource providing data on bioentities and their associated ontology terms for Plant Biology. The database provides access to ontology-based annotations of genes, phenotypes and germplasms from about 90 plant species. A number of internal and external ontologies are used to annotate the biological data available from this resource.
OBO Foundry
The Open Biological and Biomedical Ontology (OBO) Foundry is a collective of ontology developers that are committed to collaboration and adherence to shared principles. The mission of the OBO Foundry is to develop a family of interoperable ontologies that are both logically well-formed and scientifically accurate. To achieve this, OBO Foundry participants voluntarily adhere to and contribute to the development of an evolving set of principles including open use, collaborative development, non-overlapping and strictly-scoped content, and common syntax and relations, based on ontology models that work well, such as the Gene Ontology (GO). The OBO Foundry is overseen by an Operations Committee with Editorial, Technical and Outreach working groups.

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