standards > model/format > DOI:10.25504/FAIRsharing.9gx9at


ready Genome Annotation File version 1


General Information
Annotation data is submitted to the GO Consortium in the form of gene association files, or GAFs. This standard lays out the format specification for GAF 1.0



How to cite this record FAIRsharing.org: Genome Annotation File version 1; Genome Annotation File version 1; DOI: https://doi.org/10.25504/FAIRsharing.9gx9at; Last edited: Feb. 22, 2018, 2:03 p.m.; Last accessed: Oct 20 2018 4:05 a.m.


Record updated: Nov. 25, 2016, 10:22 a.m. by The FAIRsharing Team.

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Implementing Databases (3)
EcoliWiki: A Wiki-based community resource for Escherichia coli
Community-based resource for the annotation of all non-pathogenic E. coli, its phages, plasmids, and mobile genetic elements.

Simple Modular Architecture Research Tool
SMART (Simple Modular Architecture Research Tool) is a web resource providing simple identification and extensive annotation of protein domains and the exploration of protein domain architectures. It allows the identification and annotation of genetically mobile domains and the analysis of domain architectures. More than 500 domain families found in signalling, extracellular and chromatin-associated proteins are detectable. These domains are extensively annotated with respect to phyletic distributions, functional class, tertiary structures and functionally important residues. Each domain found in a non-redundant protein database as well as search parameters and taxonomic information are stored in a relational database system. User interfaces to this database allow searches for proteins containing specific combinations of domains in defined taxa.

PomBase
PomBase is a model organism database that provides organization of and access to scientific data for the fission yeast Schizosaccharomyces pombe. PomBase supports genomic sequence and features, genome-wide datasets and manual literature curation as well as providing structural and functional annotation and access to large-scale data sets.

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Grant Number(s)

  • 5U41HG002273-14] (National Human Genome Research Institute)