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RegenBase

General Information

RegenBase is a knowledge base of SCI biology. RegenBase integrates curated literature-sourced facts and experimental details from publications, raw assay data profiling the effect of compounds on enzyme activity and cell growth, and structured SCI domain knowledge in the form of the first ontology for SCI, using Semantic Web representation languages and frameworks. RegenBase enables researchers to organize and interrogate experimental data generated by spinal cord injury (SCI) research, with the ultimate goal of translating SCI experimental findings in model organisms into human therapies.

Homepage http://regenbase.org

Countries that developed this resource United States

Created in 2014

Taxonomic range

All

Knowledge Domains

Subjects

User-defined Tags

Neuroinformatics

Semantic

How to cite this record FAIRsharing.org: RegenBase; RegenBase; DOI: https://doi.org/10.25504/FAIRsharing.9nns5e; Last edited: Jan. 3, 2020, 3:27 p.m.; Last accessed: Sep 22 2020 5:20 a.m.

This record is maintained by acallahan ORCID

Record added: Jan. 5, 2016, 7:57 p.m.
Record updated: Dec. 23, 2019, 9:03 a.m. by The FAIRsharing Team.

Show edit history

Edits to 'https://fairsharing.org/FAIRsharing.9nns5e' by 'The FAIRsharing Team' at 09:03, 23 Dec 2019 (approved):

	'organizations' has been modified:
		Before:
			National Institute of Child Health and Human Development (NICHD), Rockville, MD, USA|https://www.nichd.nih.gov/Pages/index.aspx|Funds
			National Institute of Neurological Disorders and Stroke (NINDS), Bethesda, MD, USA|http://www.ninds.nih.gov/|Funds
			University of Miami School of Medicine, USA|http://med.miami.edu/|Maintains
			Stanford University Center for Biomedical Informatics Research, CA, USA|http://bmir.stanford.edu/|Maintains
			National Institutes of Health (NIH), Bethesda, MD, USA|http://www.nih.gov|Funds
		After:
			National Institute of Child Health and Human Development (NICHD), Rockville, MD, USA|https://www.nichd.nih.gov/Pages/index.aspx|Funds
			National Institute of Neurological Disorders and Stroke (NINDS), Bethesda, MD, USA|http://www.ninds.nih.gov/|Funds
			National Institutes of Health (NIH), Bethesda, MD, USA|http://www.nih.gov|Funds
			University of Miami School of Medicine, USA|http://med.miami.edu/|Maintains,Funds
			Stanford University Center for Biomedical Informatics Research, CA, USA|http://bmir.stanford.edu/|Maintains
		Added:
			University of Miami School of Medicine, USA|http://med.miami.edu/|Maintains,Funds
		Removed:
			University of Miami School of Medicine, USA|http://med.miami.edu/|Maintains

	'standardsImplemented' has been modified:
		Before:
			BioAssay Ontology
			Web Ontology Language
			Resource Description Framework
			Minimum Information About a Spinal Cord Injury experiment
			Mammalian Phenotype Ontology
		After:
			BioAssay Ontology
			Web Ontology Language
			Resource Description Framework
			Minimum Information About a Spinal Cord Injury experiment
			Mammalian Phenotype Ontology
			RegenBase ontology
		Added:
			RegenBase ontology
		Removed:

	'licences' has been modified:
		Before:
			RegenBase Terms and Conditions|http://regenbase.org/terms-of-use.html|Data
		After:
			RegenBase Terms and Conditions|http://regenbase.org/terms-of-use.html|Data
			RegenBase Privacy Policy|http://regenbase.org/privacy-policy.html|Data
		Added:
			RegenBase Privacy Policy|http://regenbase.org/privacy-policy.html|Data
		Removed:

	'onto_domains' has been modified:
		Before:
		After:
			literature curation
		Added:
			literature curation
		Removed:

	'user_defined_tags' has been modified:
		Before:
			Neuroinformatics
		After:
			Neuroinformatics
			Semantic
		Added:
			Semantic
		Removed:

	'miriam_id' has been modified:
		Before: None
		After:

Support

General

FAQ	http://regenbase.org/faq.html
contact form	http://regenbase.org/team--contact.html
help	http://regenbase.org/tutorials.html
online documentation	http://regenbase.org/regenbase.html

Additional Information

Contact

Vance Lemmon ORCID

Tools

Virtuoso SPARQL Query Editor

http://regenbase.stanford.edu:8890/sparql

Access / Retrieve Data

Conditions of Use

Applies to: Data use

Data Curation

annotate

http://regenbase.org/miasci-online/

Data Access

search	http://regenbase.org/search-tool.html
download	http://regenbase.org/download-regenbase-data.html
browse	http://regenbase.org/explore-regenbase-data.html

Publications

RegenBase: a knowledge base of spinal cord injury biology for translational research.

Callahan A,Abeyruwan SW,Al-Ali H,Sakurai K,Ferguson AR,Popovich PG,Shah NH,Visser U,Bixby JL,Lemmon VP
Database (Oxford) 2016

View Paper (PubMed) View Publication

Related Standards

Reporting Guidelines

Minimum Information About a Spinal Cord Injury experiment

Terminology Artifacts

Models and Formats

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined

Related Databases

No related databases defined

Implementing Policies

This record is not implemented by any policy.

Credit

Record Maintainer

This record is maintained by acallahan ORCID

Funds

National Institute of Child Health and Human Development (NICHD), Rockville, MD, USA (Government body)
National Institute of Neurological Disorders and Stroke (NINDS), Bethesda, MD, USA (Government body)
National Institutes of Health (NIH), Bethesda, MD, USA (Government body)
University of Miami School of Medicine, USA (University)

Maintains

University of Miami School of Medicine, USA (University)
Stanford University Center for Biomedical Informatics Research, CA, USA (Lab)

Grant Number(s)

5R01NS080145-04 (University of Miami School of Medicine, USA)
HD057632 (National Institute of Child Health and Human Development (NICHD), Rockville, MD, USA)
NS080145 (National Institute of Neurological Disorders and Stroke (NINDS), Bethesda, MD, USA)

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