standards > model/format > DOI:10.25504/FAIRsharing.9sdcx8


ready Multiple Alignment Format

Abbreviation: MFA


General Information
The Multiple Alignment Format stores DNA level multiple alignments in an easily readable format between entire genomes. Unlike previous formats this resource can cope with forward and reverse strand directions, multiple pieces to the alignment, and so forth.



How to cite this record FAIRsharing.org: MFA; Multiple Alignment Format; DOI: https://doi.org/10.25504/FAIRsharing.9sdcx8; Last edited: Feb. 22, 2018, 2:03 p.m.; Last accessed: Nov 13 2018 4:31 p.m.


Record updated: Oct. 21, 2016, 12:01 p.m. by The FAIRsharing Team.

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Implementing Databases (3)
UCSC Genome Browser database
Genome assemblies and aligned annotations for a wide range of vertebrates and model organisms, along with an integrated tool set for visualizing, comparing, analyzing and sharing both publicly available and user-generated genomic datasets.

The UCSC Archaeal Genome Browser
The UCSC Archaeal Genome Browser is a window on the biology of more than 100 microbial species from the domain Archaea. Basic gene annotation is derived from NCBI Genbank/RefSeq entries, with overlays of sequence conservation across multiple species, nucleotide and protein motifs, non-coding RNA predictions, operon predictions, and other types of bioinformatic analyses. In addition, we display available gene expression data (microarray or high-throughput RNA sequencing). Direct contributions or notices of publication of functional genomic data or bioinformatic analyses from archaeal research labs are very welcome.

GreenPhylDB: A phylogenomic database for plant comparative genomics
GreenPhylDB comprises 37 full genomes from the major phylum of plant evolution. Clustering of these genomes was performed to define a consistent and extensive set of homeomorphic plant families.

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This record is not implemented by any policy.