Enzyme Structure Function Ontology
Abbreviation: ESFO
Homepage http://sfld.rbvi.ucsf.edu/
Countries that developed this resource United States
Created in 2016
Taxonomic range
Knowledge Domains
Subjects
How to cite this record FAIRsharing.org: ESFO; Enzyme Structure Function Ontology; DOI: https://doi.org/10.25504/FAIRsharing.9y3gv0; Last edited: Dec. 18, 2019, 11:16 a.m.; Last accessed: Jan 25 2021 4:44 p.m.
Publication for citation Biocuration in the structure-function linkage database: the anatomy of a superfamily. Holliday GL,Brown SD,Akiva E,Mischel D,Hicks MA,Morris JH,Huang CC,Meng EC,Pegg SC,Ferrin TE,Babbitt PC; Database (Oxford) ; 2017; 10.1093/database/bax006;
Record added: Oct. 24, 2017, 9:41 a.m.
Record updated:
Dec. 16, 2019, 2:01 p.m. by The FAIRsharing Team.
Additional Information
Contact | Shoshana Brown |
External Links
Bioportal | http://bioportal.bioontology.org/ontologies/ESFO |
No XSD schemas defined
Conditions of Use
Biocuration in the structure-function linkage database: the anatomy of a superfamily.
Holliday GL,Brown SD,Akiva E,Mischel D,Hicks MA,Morris JH,Huang CC,Meng EC,Pegg SC,Ferrin TE,Babbitt PC
Database (Oxford) 2017
View in BioPortal.
Reporting Guidelines
No guidelines defined
Terminology Artifacts
Models and Formats
No syntax standards defined
Identifier Schemas
No identifier schema standards defined
Metrics
No metrics standards defined
MACiE is an electronic database of well-characterised enzymatic reactions. MACiE is the result of more than three years' collaboration between the Mitchell and Murray-Rust groups in the Unilever Centre and Prof. Janet Thornton at the European Bioinformatics Institute. The database contains the reaction mechanisms for 100 individual enzymes; this includes the overall reactions and the multiple steps that constitute them.
Structure Function Linkage Database Archive
Structure Function Linkage Database (SFLD) is a database of enzymes classified by linking sequences to chemical function. A hierachical systems is used to classify enzymes by family or superfamily other category levels include functional domain, subgroup and suprafamily. The archive does not contain the interactive functionality found in the original SFLD, such as search capabilities. Instead, the archive is a static snapshot of the data in the SFLD as of April 2019, and will not be updated.
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Maintains
Department of Bioengineering and Therapeutic Sciences, University of California, San Francisco, USA (University)
Human Longevity, Inc, San Diego, USA (Company)
Department of Pharmaceutical Chemistry, School of Pharmacy, University of California, San Francisco, USA (University)
Gladstone Institutes (Government body)
California Institute for Quantitative Biosciences, University of California, San Francisco, USA (Research institute)