Edits to 'https://fairsharing.org/FAIRsharing.BnLUyq' by 'Chanaka' at 10:42, 18 Dec 2019 (approved):
'description' has been modified:
Before: The Plant Genome Integrative Explorer is a collection of interoperable web resources for searching, visualising and analysing genomics and transcriptomics data for different plant species. Currently, it includes dedicated web portals for enabling in-depth exploration of Poplar, Eucalyptus Norway spruce, and Arabidopsis. The PlantGenIE platform uses Chado databases and is based on the GenIE-Sys ( Genome Integrative Explorer System). Within PlantGenIE are four systems, each dedicated to a different species (PopGenIE, ConGenIE, AtGenIE and EucGenIE).
After: The Plant Genome Integrative Explorer is a collection of interoperable web resources for searching, visualising and analysing genomics and transcriptomics data for different plant species. Currently, it includes dedicated web portals for enabling in-depth exploration of Poplar, Eucalyptus Norway spruce, and Arabidopsis and few more plant species. The PlantGenIE platform is based on the GenIE-Sys ( Genome Integrative Explorer System).
Edits to 'https://fairsharing.org/FAIRsharing.BnLUyq' by 'The FAIRsharing Team' at 09:42, 05 Dec 2019 (approved):
'description' has been modified:
Before: The Plant Genome Integrative Explorer is a collection of interoperable web resources for searching, visualising and analysing genomics and transcriptomics data for different plant species. Currently, it includes dedicated web portals for enabling in-depth exploration of Poplar, Eucalyptus Norway spruce, and Arabidopsis. The PlantGenIE platform uses Chado databases and is based on the GenIE-Sys ( Genome Integrative Explorer System).
After: The Plant Genome Integrative Explorer is a collection of interoperable web resources for searching, visualising and analysing genomics and transcriptomics data for different plant species. Currently, it includes dedicated web portals for enabling in-depth exploration of Poplar, Eucalyptus Norway spruce, and Arabidopsis. The PlantGenIE platform uses Chado databases and is based on the GenIE-Sys ( Genome Integrative Explorer System). Within PlantGenIE are four systems, each dedicated to a different species (PopGenIE, ConGenIE, AtGenIE and EucGenIE).
'dataProcesses' has been modified:
Before:
Sequence Search
Community Annotation
Download (FTP)
After:
Sequence Search
Community Annotation
Download (FTP)
PopGenIE
AtGenIE
ConGenIE
EucGenIE
Added:
PopGenIE
AtGenIE
ConGenIE
EucGenIE
Removed:
Edits to 'https://fairsharing.org/FAIRsharing.BnLUyq' by 'Chanaka' at 09:25, 04 Dec 2019 (approved):
'supportLinks' has been modified:
Before:
email|contact@plantgenie.org
help|http://congenie.org/help
After:
email|contact@plantgenie.org
help|https://plantgenie.org/help/tool_id/blast/
Added:
help|https://plantgenie.org/help/tool_id/blast/
Removed:
help|http://congenie.org/help
Edits to 'https://fairsharing.org/FAIRsharing.BnLUyq' by 'Chanaka' at 09:21, 04 Dec 2019 (approved):
'taxonomies' has been modified:
Before:
Picea abies
Picea taeda
After:
Arabidopsis thaliana
Eucalyptus grandis
Picea abies
Picea taeda
Populus trichocarpa
Added:
Arabidopsis thaliana
Eucalyptus grandis
Populus trichocarpa
Removed:
Edits to 'https://fairsharing.org/FAIRsharing.BnLUyq' by 'The FAIRsharing Team' at 09:13, 04 Dec 2019 (approved):
'supportLinks' has been modified:
Before:
email|contact@plantgenie.org
After:
email|contact@plantgenie.org
help|http://congenie.org/help
Added:
help|http://congenie.org/help
Removed:
'taxonomies' has been modified:
Before:
RNA-Seq
After:
Picea abies
Picea taeda
Added:
Picea abies
Picea taeda
Removed:
RNA-Seq
'tools' has been modified:
Before:
After:
BLAST||http://congenie.org/blast
Gene List||http://congenie.org/citation?genelist=enable
GBrowse||http://congenie.org/gbrowse
JBrowse||http://congenie.org/jbrowse
Random Gene List||http://congenie.org/random_gene_list
exImage||http://congenie.org/eximage
exNet||http://congenie.org/exnet
exPlot||http://congenie.org/explot
exHeatmap||http://congenie.org/exheatmap
Enrichment||http://congenie.org/enrichment
ComPlEx||http://complex.plantgenie.org/
Galaxy||http://galaxy.plantgenie.org:8080/
Added:
BLAST||http://congenie.org/blast
Gene List||http://congenie.org/citation?genelist=enable
GBrowse||http://congenie.org/gbrowse
JBrowse||http://congenie.org/jbrowse
Random Gene List||http://congenie.org/random_gene_list
exImage||http://congenie.org/eximage
exNet||http://congenie.org/exnet
exPlot||http://congenie.org/explot
exHeatmap||http://congenie.org/exheatmap
Enrichment||http://congenie.org/enrichment
ComPlEx||http://complex.plantgenie.org/
Galaxy||http://galaxy.plantgenie.org:8080/
Removed:
'dataProcesses' has been modified:
Before:
After:
Sequence Search
Community Annotation
Download (FTP)
Added:
Sequence Search
Community Annotation
Download (FTP)
Removed:
'onto_domains' has been modified:
Before:
Genome visualisation
QTL
RNA sequence
Sequence alignment
coexpression
gene expression
After:
GO-term enrichment report
Genome annotation
Genome assembly
Genome visualisation
QTL
RNA sequence
RNA-seq assay
Sequence alignment
coexpression
gene expression
protein
Added:
GO-term enrichment report
Genome annotation
Genome assembly
RNA-seq assay
protein
Removed:
Edits to 'https://fairsharing.org/FAIRsharing.BnLUyq' by 'Chanaka' at 08:43, 04 Dec 2019 (approved):
'licences' has been modified:
Before:
Chanaka Mannapperuma|https://opensource.org/licenses/BSD-3-Clause|Data
After:
BSD-3-Clause License (Modified BSD License) (New BSD License)|https://opensource.org/licenses/BSD-3-Clause|Data
Added:
BSD-3-Clause License (Modified BSD License) (New BSD License)|https://opensource.org/licenses/BSD-3-Clause|Data
Removed:
Chanaka Mannapperuma|https://opensource.org/licenses/BSD-3-Clause|Data
Edits to 'https://fairsharing.org/FAIRsharing.BnLUyq' by 'Chanaka' at 08:35, 04 Dec 2019 (approved):
'licences' has been modified:
Before:
BSD-3-Clause License (Modified BSD License) (New BSD License)|https://opensource.org/licenses/BSD-3-Clause|Data
After:
Chanaka Mannapperuma|https://opensource.org/licenses/BSD-3-Clause|Data
Added:
Chanaka Mannapperuma|https://opensource.org/licenses/BSD-3-Clause|Data
Removed:
BSD-3-Clause License (Modified BSD License) (New BSD License)|https://opensource.org/licenses/BSD-3-Clause|Data
'organizations' has been modified:
Before:
After:
Ume Plant Science Centre|https://upsc.se|Maintains
Added:
Ume Plant Science Centre|https://upsc.se|Maintains
Removed:
'taxonomies' has been modified:
Before:
Gene Expression
Gene Ontology Enrichment
Genome Annotation
Genome Assembly
RNA-Seq
Visualisation
After:
Gene Expression
Gene Ontology Enrichment
Genome Annotation
Genome Assembly
Protein Analysis
RNA-Seq
Visualisation
Added:
Protein Analysis
Removed:
'onto_disciplines' has been modified:
Before:
After:
Bioinformatics
Data Visualization
Functional Genomics
Genomics
Life Science
Phylogenetics
Added:
Bioinformatics
Data Visualization
Functional Genomics
Genomics
Life Science
Phylogenetics
Removed:
'onto_domains' has been modified:
Before:
After:
Genome visualisation
QTL
RNA sequence
Sequence alignment
coexpression
gene expression
Added:
Genome visualisation
QTL
RNA sequence
Sequence alignment
coexpression
gene expression
Removed:
Edits to 'https://fairsharing.org/FAIRsharing.BnLUyq' by 'Chanaka' at 08:25, 04 Dec 2019 (approved):
'licences' has been modified:
Before:
After:
BSD-3-Clause License (Modified BSD License) (New BSD License)|https://opensource.org/licenses/BSD-3-Clause|Data
Added:
BSD-3-Clause License (Modified BSD License) (New BSD License)|https://opensource.org/licenses/BSD-3-Clause|Data
Removed:
'supportLinks' has been modified:
Before:
After:
email|contact@plantgenie.org
Added:
email|contact@plantgenie.org
Removed:
'taxonomies' has been modified:
Before:
After:
Gene Expression
Gene Ontology Enrichment
Genome Annotation
Genome Assembly
RNA-Seq
Visualisation
Added:
Gene Expression
Gene Ontology Enrichment
Genome Annotation
Genome Assembly
RNA-Seq
Visualisation
Removed:
'tools' has been modified:
Before:
exImage|v1.0|https://eucgenie.org/eximage
After:
Added:
Removed:
exImage|v1.0|https://eucgenie.org/eximage
Edits to 'https://fairsharing.org/FAIRsharing.BnLUyq' by 'Chanaka' at 08:15, 04 Dec 2019 (approved):
'accessPoints' has been modified:
Before:
After:
REST|https://api.plantgenie.org|Pubic API to query PlantGenIE databases
Added:
REST|https://api.plantgenie.org|Pubic API to query PlantGenIE databases
Removed:
'tools' has been modified:
Before:
After:
exImage|v1.0|https://eucgenie.org/eximage
Added:
exImage|v1.0|https://eucgenie.org/eximage
Removed:
'publications' has been modified:
Before:
After:
The Plant Genome Integrative Explorer Resource: PlantGenIE.org.|Sundell D,Mannapperuma C,Netotea S,Delhomme N,Lin YC,Sjodin A,Van de Peer Y,Jansson S,Hvidsten TR,Street NR|New Phytol|2015
Added:
The Plant Genome Integrative Explorer Resource: PlantGenIE.org.|Sundell D,Mannapperuma C,Netotea S,Delhomme N,Lin YC,Sjodin A,Van de Peer Y,Jansson S,Hvidsten TR,Street NR|New Phytol|2015
Removed: