ViBrism DB
Homepage http://vibrism.neuroinf.jp/
Countries that developed this resource Japan
Created in 2012
Taxonomic range
Knowledge Domains
Subjects
User-defined Tags
How to cite this record FAIRsharing.org: ViBrism DB; ViBrism DB; DOI: https://doi.org/10.25504/FAIRsharing.EJFNZn; Last edited: Feb. 24, 2021, 11:09 a.m.; Last accessed: Feb 28 2021 1:48 p.m.
Record added: Nov. 7, 2018, 2:46 p.m.
Record updated:
Feb. 24, 2021, 11:09 a.m. by The FAIRsharing Team.
support email | ViBrism DB Committee |
help | ViBrism Instructions |
online documentation | About ViBrism |
online documentation | Video Tutorials |
Additional Information
Contact | Yuko Okamura-Oho ORCID |
Conditions of Use
Applies to: Data useData Release
GEO Series accession numbers GSE118176 | http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE118176 |
GEO Series accession numbers GSE118177 | http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE118177 |
GEO Series accession numbers GSE118178 | http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE118178 |
GEO Series accession numbers GSE36408 | https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE36408 |
Data Access
Expression Similarity Search and Network Viewer | http://vibrism.neuroinf.jp/setsearch/search |
Expression Density Search in Anatomical Areas | http://vibrism.neuroinf.jp/setsearch/anatomical |
BAH Viewer | http://vibrism.neuroinf.jp/bahviewer.html |
3D Expression Map (Search by Gene ID) | http://vibrism.neuroinf.jp/search.html |
ViBrism DB: an interactive search and viewer platform for 2D/3D anatomical images of gene expression and co-expression networks.
Morita M,Shimokawa K,Nishimura M,Nakamura S,Tsujimura Y,Takemoto S,Tawara T,Yokota H,Wemler S,Miyamoto D,Ikeno H,Sato A,Furuichi T,Kobayashi N,Okumura Y,Yamaguchi Y,Okamura-Oho Y
Nucleic Acids Res 2018
Broad integration of expression maps and co-expression networks compassing novel gene functions in the brain.
Okamura-Oho Y,Shimokawa K,Nishimura M,Takemoto S,Sato A,Furuichi T,Yokota H
Sci Rep 2014
Transcriptome tomography for brain analysis in the web-accessible anatomical space.
Okamura-Oho Y,Shimokawa K,Takemoto S,Hirakiyama A,Nakamura S,Tsujimura Y,Nishimura M,Kasukawa T,Masumoto KH,Nikaido I,Shigeyoshi Y,Ueda HR,Song G,Gee J,Himeno R,Yokota H
PLoS One 2012
Reporting Guidelines
No guidelines defined
Terminology Artifacts
No semantic standards defined
Models and Formats
No syntax standards defined
Identifier Schemas
No identifier schema standards defined
Metrics
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No related databases defined
This record is not implemented by any policy.
Record Maintainer
This record is maintained by yukooho
Funds
Japan Society for the Promotion of Science, Tokyo, Japan (Consortium)
Neuroinformatics Unit, RIKEN Center for Brain Science (Research institute) Lead
Maintains
Neuroinformatics Unit, RIKEN Center for Brain Science (Research institute) Lead
Grant Number(s)
JSPS KAKENHI 15HP8038 (Japan Society for the Promotion of Science, Tokyo, Japan)
JSPS KAKENHI 16HP8032 (Japan Society for the Promotion of Science, Tokyo, Japan)
JSPS KAKENHI 16J09788 (Japan Society for the Promotion of Science, Tokyo, Japan)
JSPS KAKENHI 17HP8082 (Japan Society for the Promotion of Science, Tokyo, Japan)
JSPS KAKENHI 23300137 (Japan Society for the Promotion of Science, Tokyo, Japan)
JSPS KAKENHI 25330342 (Japan Society for the Promotion of Science, Tokyo, Japan)
JSPS KAKENHI 25560428 (Japan Society for the Promotion of Science, Tokyo, Japan)
JSPS KAKENHI 258057 (Japan Society for the Promotion of Science, Tokyo, Japan)
JSPS KAKENHI 26280110 (Japan Society for the Promotion of Science, Tokyo, Japan)
JSPS KAKENHI 268032 (Japan Society for the Promotion of Science, Tokyo, Japan)
JSPS KAKENHI JP15H05954 (Japan Society for the Promotion of Science, Tokyo, Japan)