Edits to 'https://fairsharing.org/FAIRsharing.QXSgvF' by 'The FAIRsharing Team' at 20:14, 12 Dec 2020 (approved):
'user_defined_tags' has been modified:
Before:
Evolutionary relationship between proteins via sequence similarity
After:
Added:
Removed:
Evolutionary relationship between proteins via sequence similarity
'miriam_id' has been modified:
Before: None
After:
'description' has been modified:
Before: MirGeneDB is a database of microRNA genes that have been validated and annotated as described in "A Uniform System for the Annotation of Vertebrate microRNA Genes and the Evolution of the Human microRNAome".* The initial version contained 1,434 microRNA genes for human, mouse, chicken and zebrafish. Version 2.0 contains more than 10,000 genes from 45 organisms representing nearly every major metazoan group, and these microRNAs can be browsed, searched and downloaded.
New features to MirgeneDB2.0 include:
- Extensive expression data ranging from whole animal-samples to organs/tissues to cell-types based on publicly available datasets.
- Annotations of 3' non-templated uridylations, processing motifs, anti-sense transcription, and of gene variants derived from alternative processing by Drosha and/or Dicer, are now provided for every miRNA.
- Updated annotations of the 3' ends for human, mouse, zebrafish and water fleas based on publicly available CAGE data.
- Comprehensive annotations of the evolutionary origin of both miRNA families (updated) and miRNA genes (new) with all orthologues and paralogues clearly identified both through name and through the hierarchy of the database. Further, the miRNA repertoires (both family and gene) are identified for all last common ancestors of the taxa included in the database.
- All relevant fasta and annotation files (bed & gff) for all taxa are available for immediate download.
- All known false negatives are reported separately including the mature (and if known the star) read supporting the designation.
MirGeneDB 2.0 is published with Nucleic Acids Research (database issue): "Fromm et al "MirGeneDB2.0: The metazoan microRNA complement""
After: MirGeneDB is a database of microRNA genes that have been validated and annotated as described in "A Uniform System for the Annotation of Vertebrate microRNA Genes and the Evolution of the Human microRNAome".* The initial version contained 1,434 microRNA genes for human, mouse, chicken and zebrafish. Version 2.0 contains more than 10,000 genes from 45 organisms representing nearly every major metazoan group, and these microRNAs can be browsed, searched and downloaded.
Edits to 'https://fairsharing.org/FAIRsharing.QXSgvF' by 'The FAIRsharing Team' at 16:09, 09 Dec 2020 (approved):
'miriam_id' has been modified:
Before:
After: None
Edits to 'https://fairsharing.org/FAIRsharing.QXSgvF' by 'BastianFromm' at 12:29, 09 Dec 2020 (approved):
'user_defined_tags' has been modified:
Before:
After:
Evolutionary relationship between proteins via sequence similarity
Added:
Evolutionary relationship between proteins via sequence similarity
Removed:
'onto_disciplines' has been modified:
Before:
Life Science
After:
Evolutionary Biology
Life Science
Added:
Evolutionary Biology
Removed:
'description' has been modified:
Before: MirGeneDB is a database of microRNA genes that have been validated and annotated. The initial version contained 1,434 microRNA genes for human, mouse, chicken and zebrafish. Version 2.0 contains more than 7,500 genes from 33 organisms representing nearly every major metazoan group, and these microRNAs can be browsed, searched and downloaded.
After: MirGeneDB is a database of microRNA genes that have been validated and annotated as described in "A Uniform System for the Annotation of Vertebrate microRNA Genes and the Evolution of the Human microRNAome".* The initial version contained 1,434 microRNA genes for human, mouse, chicken and zebrafish. Version 2.0 contains more than 10,000 genes from 45 organisms representing nearly every major metazoan group, and these microRNAs can be browsed, searched and downloaded.
New features to MirgeneDB2.0 include:
- Extensive expression data ranging from whole animal-samples to organs/tissues to cell-types based on publicly available datasets.
- Annotations of 3' non-templated uridylations, processing motifs, anti-sense transcription, and of gene variants derived from alternative processing by Drosha and/or Dicer, are now provided for every miRNA.
- Updated annotations of the 3' ends for human, mouse, zebrafish and water fleas based on publicly available CAGE data.
- Comprehensive annotations of the evolutionary origin of both miRNA families (updated) and miRNA genes (new) with all orthologues and paralogues clearly identified both through name and through the hierarchy of the database. Further, the miRNA repertoires (both family and gene) are identified for all last common ancestors of the taxa included in the database.
- All relevant fasta and annotation files (bed & gff) for all taxa are available for immediate download.
- All known false negatives are reported separately including the mature (and if known the star) read supporting the designation.
MirGeneDB 2.0 is published with Nucleic Acids Research (database issue): "Fromm et al "MirGeneDB2.0: The metazoan microRNA complement""
'onto_domains' has been modified:
Before:
Sequence annotation
miRNA
pre_miRNA
After:
Evolution
Sequence annotation
miRNA
pre_miRNA
Added:
Evolution
Removed:
'publications' has been modified:
Before:
A Uniform System for the Annotation of Vertebrate microRNA Genes and the Evolution of the Human microRNAome.|Fromm B,Billipp T,Peck LE,Johansen M,Tarver JE,King BL,Newcomb JM,Sempere LF,Flatmark K,Hovig E,Peterson KJ|Annu Rev Genet|2015
MirGeneDB2.0: the curated microRNA Gene Database (Preprint)|Bastian Fromm, Diana Domanska, Michael Hackenberg, Anthony Mathelier, Eirik Hoye, Morten Johansen, Eivind Hovig, Kjersti Flatmark, Kevin J Peterson|bioRxiv|2018
After:
A Uniform System for the Annotation of Vertebrate microRNA Genes and the Evolution of the Human microRNAome.|Fromm B,Billipp T,Peck LE,Johansen M,Tarver JE,King BL,Newcomb JM,Sempere LF,Flatmark K,Hovig E,Peterson KJ|Annu Rev Genet|2015
MirGeneDB2.0: the curated microRNA Gene Database (Preprint)|Bastian Fromm, Diana Domanska, Michael Hackenberg, Anthony Mathelier, Eirik Hoye, Morten Johansen, Eivind Hovig, Kjersti Flatmark, Kevin J Peterson|bioRxiv|2018
MirGeneDB 2.0: the metazoan microRNA complement.|Fromm B,Domanska D,Hoye E,Ovchinnikov V,Kang W,Aparicio-Puerta E,Johansen M,Flatmark K,Mathelier A,Hovig E,Hackenberg M,Friedlander MR,Peterson KJ|Nucleic Acids Res|2019
Added:
MirGeneDB 2.0: the metazoan microRNA complement.|Fromm B,Domanska D,Hoye E,Ovchinnikov V,Kang W,Aparicio-Puerta E,Johansen M,Flatmark K,Mathelier A,Hovig E,Hackenberg M,Friedlander MR,Peterson KJ|Nucleic Acids Res|2019
Removed:
Edits to 'https://fairsharing.org/FAIRsharing.QXSgvF' by 'BastianFromm' at 12:24, 09 Dec 2020 (approved):
'taxonomies' has been modified:
Before:
Danio rerio
Gallus gallus
Homo sapiens
Mus musculus
After:
Aedes aegypti
Alligator Mississippiensis
Anolis carolinensis
Ascaris suum
Blattella germanica
Bos taurus
Branchiostoma floridae
Caenorhabditis briggsae
Caenorhabditis elegans
Canis familiaris
Capitella teleta
Cavia porcellus
Chrysemys picta belli
Ciona intestinalis
Columba livia
Crassostrea gigas
Danio rerio
Daphnia pulex
Dasypus novemcinctus
Drosophila ananassae
Drosophila melanogaster
Drosophila mojavensis
Echinops telfairi
Eisenia fetida
Gallus gallus
Heliconius melpomene
Homo sapiens
Ixodes scapularis
Lingula anatina
Lottia gigantea
Macaca mulatta
Monodelphis domestica
Mus musculus
Ornithorhynchus anatinus
Oryctolagus cuniculus
Patiria miniata
Ptychodera flava
Rattus norvegicus
Saccoglossus kowalevskii
Sarcophilus harrisii
Scyliorhinus torazame
Strongylocentrotus purpuratus
Taeniopygia guttata
Tribolium castaneum
Xenopus tropicalis
Added:
Aedes aegypti
Alligator Mississippiensis
Anolis carolinensis
Ascaris suum
Blattella germanica
Bos taurus
Branchiostoma floridae
Caenorhabditis briggsae
Caenorhabditis elegans
Canis familiaris
Capitella teleta
Cavia porcellus
Chrysemys picta belli
Ciona intestinalis
Columba livia
Crassostrea gigas
Daphnia pulex
Dasypus novemcinctus
Drosophila ananassae
Drosophila melanogaster
Drosophila mojavensis
Echinops telfairi
Eisenia fetida
Heliconius melpomene
Ixodes scapularis
Lingula anatina
Lottia gigantea
Macaca mulatta
Monodelphis domestica
Ornithorhynchus anatinus
Oryctolagus cuniculus
Patiria miniata
Ptychodera flava
Rattus norvegicus
Saccoglossus kowalevskii
Sarcophilus harrisii
Scyliorhinus torazame
Strongylocentrotus purpuratus
Taeniopygia guttata
Tribolium castaneum
Xenopus tropicalis
Removed:
'contactORCID' has been modified:
Before:
After: 0000-0003-0352-3037
Edits to 'https://fairsharing.org/FAIRsharing.QXSgvF' by 'The FAIRsharing Team' at 13:25, 03 Jul 2018 (approved):
'supportLinks' has been modified:
Before:
After:
http://mirgenedb.org/information
@MirGeneDB
Added:
http://mirgenedb.org/information
@MirGeneDB
Removed:
Edits to 'https://fairsharing.org/FAIRsharing.QXSgvF' by 'The FAIRsharing Team' at 13:23, 03 Jul 2018 (approved):
'description' has been modified:
Before: MirGeneDB is a database of microRNA genes that have been validated and annotated as described in "A Uniform System for the Annotation of Vertebrate microRNA Genes and the Evolution of the Human microRNAome".* The initial version contained 1,434 microRNA genes for human, mouse, chicken and zebrafish. Version 2.0 contains more than 7,500 genes from 33 organisms representing nearly every major metazoan group, and these microRNAs can be browsed, searched and downloaded.
After: MirGeneDB is a database of microRNA genes that have been validated and annotated. The initial version contained 1,434 microRNA genes for human, mouse, chicken and zebrafish. Version 2.0 contains more than 7,500 genes from 33 organisms representing nearly every major metazoan group, and these microRNAs can be browsed, searched and downloaded.
MirGeneDB.org
