TargetMine
Homepage http://targetmine.mizuguchilab.org/targetmine
Countries that developed this resource Japan
Created in 2011
Taxonomic range
Knowledge Domains
Subjects
How to cite this record FAIRsharing.org: TargetMine; TargetMine; DOI: https://doi.org/10.25504/FAIRsharing.QXYuxK; Last edited: Sept. 20, 2019, 11:51 a.m.; Last accessed: Sep 28 2020 9:38 a.m.
Publication for citation An integrative data analysis platform for gene set analysis and knowledge discovery in a data warehouse framework. Chen YA,Tripathi LP,Mizuguchi K; Database (Oxford) ; 2016; 10.1093/database/baw009;
Record added: Dec. 11, 2018, 8:56 p.m.
Record updated:
Sept. 20, 2019, 11:51 a.m. by The FAIRsharing Team.
| help | Tutorial |
| online documentation | Data Categories |
TeSS training resources
TargetMine tutorials Tutorials for an InterMine designed to help identify drug targets.
Conditions of Use
Applies to: Database softwareData Access
| Advanced Search (Query Builder) | https://targetmine.mizuguchilab.org/targetmine/customQuery.do |
| Search Against A List | https://targetmine.mizuguchilab.org/targetmine/bag.do |
| Search Via Pre-Defined Queries | https://targetmine.mizuguchilab.org/targetmine/templates.do |
REST Web Services
| Web Service Client (Perl, Python, Ruby, Java) | https://targetmine.mizuguchilab.org/targetmine/api.do |
An integrative data analysis platform for gene set analysis and knowledge discovery in a data warehouse framework.
Chen YA,Tripathi LP,Mizuguchi K
Database (Oxford) 2016
TargetMine, an integrated data warehouse for candidate gene prioritisation and target discovery.
Chen YA,Tripathi LP,Mizuguchi K
PLoS One 2011
Reporting Guidelines
No guidelines defined
Terminology Artifacts
Models and Formats
No syntax standards defined
Identifier Schemas
No identifier schema standards defined
Metrics
No metrics standards defined
- ChEMBL
- Gene3D
- Open Regulatory Annotation
- PhosphoSite Plus
- DrugBank
- Gene Ontology Annotation Database
- Integrated resource of protein families, domains and functional sites
- Reactome - a curated knowledgebase of biological pathways
- Structural Classification Of Proteins
- Pathway Interaction Database
- Database of Single Nucleotide Polymorphism
- PubMed
- Biological General Repository for Interaction Datasets
- Ligand Expo
- Interaction Reference Index Web Interface
- UniProt Knowledgebase
- CATH Protein Structure Classification
- miRBase Sequence Database
- miRTarBase
- DisGeNET: a knowledge base for disease genomics
- Kyoto Encyclopedia of Genes and Genomes
- Worldwide Protein Data Bank
- ClinVar
- The International Genome Sample Resource
- Enzyme nomenclature database
- Human Transcriptional Regulation Interactions database
- Human Genetic Variation Database
- Human Reference Protein Interactome Mapping Project
- InterMine
This record is not implemented by any policy.
