Edits to 'https://fairsharing.org/FAIRsharing.Ql6K87' by 'The FAIRsharing Team' at 13:23, 04 Feb 2021 (approved):
'onto_domains' has been modified:
Before:
Data retrieval
Mathematical model
Pathway or network prediction
Prediction and recognition
Reaction data
genome
modeling and simulation objective
network model
After:
Data retrieval
Mathematical model
Prediction and recognition
Reaction data
genome
modeling and simulation objective
network model
Added:
Removed:
Pathway or network prediction
Edits to 'https://fairsharing.org/FAIRsharing.Ql6K87' by 'The FAIRsharing Team' at 13:22, 04 Feb 2021 (approved):
'related_databases' has been modified:
Before:
US Department of Energy Systems Biology Knowledgebase
After:
MetaCyc
Kyoto Encyclopedia of Genes and Genomes
US Department of Energy Systems Biology Knowledgebase
Phytozome
Added:
MetaCyc
Kyoto Encyclopedia of Genes and Genomes
Phytozome
Removed:
'supportLinks' has been modified:
Before:
forum|https://github.com/ModelSEED/ModelSEEDDatabase/issues
online documentation|https://modelseed.org/about
After:
forum|https://github.com/ModelSEED/ModelSEEDDatabase/issues
online documentation|https://modelseed.org/about
online documentation|https://github.com/ModelSEED/ModelSEEDDatabase
Added:
online documentation|https://github.com/ModelSEED/ModelSEEDDatabase
Removed:
'description' has been modified:
Before: For over 10 years, ModelSEED has been a primary resource for the construction of draft genome-scale metabolic models based on annotated microbial or plant genomes. Now being released, the biochemistry database serves as the foundation of biochemical data underlying ModelSEED and KBase. The biochemistry database embodies several properties that, taken together, distinguish it from other published biochemistry resources by: (i) including compartmentalization, transport reactions, charged molecules and proton balancing on reactions; (ii) being extensible by the user community, with all data stored in GitHub; and (iii) design as a biochemical ?Rosetta Stone? to facilitate comparison and integration of annotations from many different tools and databases. The database was constructed by combining chemical data from many resources, applying standard transformations, identifying redundancies and computing thermodynamic properties. The ModelSEED biochemistry is continually tested using flux balance analysis to ensure the biochemical network is modeling-ready and capable of simulating diverse phenotypes. Ontologies can be designed to aid in comparing and reconciling metabolic reconstructions that differ in how they represent various metabolic pathways. ModelSEED now includes 33,978 compounds and 36,645 reactions, available as a set of extensible files on GitHub, and available to search at https://modelseed.org and KBase.
After: For over 10 years, ModelSEED has been a primary resource for the construction of draft genome-scale metabolic models based on annotated microbial or plant genomes. The ModelSEED biochemistry database is the foundation of the biochemical data underlying ModelSEED and KBase. The The ModelSEED biochemistry database (i) includes compartmentalization, transport reactions, charged molecules and proton balancing on reactions; (ii) is extensible by the user community, with all data stored in GitHub; and (iii) designed as a biochemical ?Rosetta Stone? to facilitate comparison and integration of annotations from many different tools and databases. The database was constructed by combining chemical data from many resources, applying standard transformations, identifying redundancies and computing thermodynamic properties. The ModelSEED biochemistry is continually tested using flux balance analysis to ensure the biochemical network is modeling-ready and capable of simulating diverse phenotypes.
'onto_disciplines' has been modified:
Before:
Biochemistry
Life Science
After:
Biochemistry
Data Integration
Life Science
Added:
Data Integration
Removed:
'dataProcesses' has been modified:
Before:
Browse & search reactions, data access, https://modelseed.org/biochem/reactions
Browse & search compounds, data access, https://modelseed.org/biochem/compounds
ModelSEED Biochemistry Database v1.1.1, data versioning, https://github.com/ModelSEED/ModelSEEDDatabase/tree/v1.1.1
After:
Browse & search reactions, data access, https://modelseed.org/biochem/reactions
Browse & search compounds, data access, https://modelseed.org/biochem/compounds
Data Versions, data versioning, https://github.com/ModelSEED/ModelSEEDDatabase/releases
Added:
Data Versions, data versioning, https://github.com/ModelSEED/ModelSEEDDatabase/releases
Removed:
ModelSEED Biochemistry Database v1.1.1, data versioning, https://github.com/ModelSEED/ModelSEEDDatabase/tree/v1.1.1
'onto_domains' has been modified:
Before:
Data retrieval
Pathway or network prediction
Reaction data
After:
Data retrieval
Mathematical model
Pathway or network prediction
Prediction and recognition
Reaction data
genome
modeling and simulation objective
network model
Added:
Mathematical model
Prediction and recognition
genome
modeling and simulation objective
network model
Removed:
Edits to 'https://fairsharing.org/FAIRsharing.Ql6K87' by 'The FAIRsharing Team' at 16:06, 09 Nov 2020 (approved):
'onto_disciplines' has been modified:
Before:
Biochemistry
After:
Biochemistry
Life Science
Added:
Life Science
Removed:
'onto_domains' has been modified:
Before:
Data retrieval
After:
Data retrieval
Pathway or network prediction
Reaction data
Added:
Pathway or network prediction
Reaction data
Removed:
Edits to 'https://fairsharing.org/FAIRsharing.Ql6K87' by 'seaver' at 15:49, 21 Oct 2020 (approved):
'dataProcesses' has been modified:
Before:
Browse & search reactions, data access, https://modelseed.org/biochem/reactions
Browse & search subsystems, data access, https://modelseed.org/genomes/Annotations
plant models, data access, https://modelseed.org/genomes/Plants
Browse & search compounds, data access, https://modelseed.org/biochem/compounds
Browse & search media, data access, https://modelseed.org/list-media/
ModelSEED v2.6.1, data versioning, https://modelseed.org/about/version
After:
Browse & search reactions, data access, https://modelseed.org/biochem/reactions
Browse & search compounds, data access, https://modelseed.org/biochem/compounds
ModelSEED Biochemistry Database v1.1.1, data versioning, https://github.com/ModelSEED/ModelSEEDDatabase/tree/v1.1.1
Added:
ModelSEED Biochemistry Database v1.1.1, data versioning, https://github.com/ModelSEED/ModelSEEDDatabase/tree/v1.1.1
Removed:
Browse & search subsystems, data access, https://modelseed.org/genomes/Annotations
plant models, data access, https://modelseed.org/genomes/Plants
Browse & search media, data access, https://modelseed.org/list-media/
ModelSEED v2.6.1, data versioning, https://modelseed.org/about/version
Edits to 'https://fairsharing.org/FAIRsharing.Ql6K87' by 'The FAIRsharing Team' at 15:45, 20 Oct 2020 (approved):
'supportLinks' has been modified:
Before:
forum|https://github.com/ModelSEED/ModelSEEDDatabase/issues
After:
forum|https://github.com/ModelSEED/ModelSEEDDatabase/issues
online documentation|https://modelseed.org/about
Added:
online documentation|https://modelseed.org/about
Removed:
'dataProcesses' has been modified:
Before:
After:
Browse & search reactions, data access, https://modelseed.org/biochem/reactions
Browse & search subsystems, data access, https://modelseed.org/genomes/Annotations
plant models, data access, https://modelseed.org/genomes/Plants
Browse & search compounds, data access, https://modelseed.org/biochem/compounds
Browse & search media, data access, https://modelseed.org/list-media/
ModelSEED v2.6.1, data versioning, https://modelseed.org/about/version
Added:
Browse & search reactions, data access, https://modelseed.org/biochem/reactions
Browse & search subsystems, data access, https://modelseed.org/genomes/Annotations
plant models, data access, https://modelseed.org/genomes/Plants
Browse & search compounds, data access, https://modelseed.org/biochem/compounds
Browse & search media, data access, https://modelseed.org/list-media/
ModelSEED v2.6.1, data versioning, https://modelseed.org/about/version
Removed:
Edits to 'https://fairsharing.org/FAIRsharing.Ql6K87' by 'The FAIRsharing Team' at 14:46, 20 Oct 2020 (approved):
'licences' has been modified:
Before:
Creative Commons Attribution Non-Commercial License|http://creativecommons.org/licenses/by-nc/4.0/|Data
After:
Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)|https://creativecommons.org/licenses/by-nc/4.0/|Data
Added:
Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)|https://creativecommons.org/licenses/by-nc/4.0/|Data
Removed:
Creative Commons Attribution Non-Commercial License|http://creativecommons.org/licenses/by-nc/4.0/|Data
'miriam_id' has been modified:
Before: None
After:
Edits to 'https://fairsharing.org/FAIRsharing.Ql6K87' by 'The FAIRsharing Team' at 13:44, 19 Oct 2020 (approved):
'doi' has been modified:
Before: None
After:
'miriam_id' has been modified:
Before:
After: None