MAR databases

Abbreviation:MAR

General Information

The MAR databases is a collection of manually curated marine microbial contextual and sequence databases, based at the Marine Metagenomics Portal. This was developed as a part of the ELIXIR EXCELERATE project in 2017 and is maintained by The Center for Bioinformatics (SfB) at the UiT The Arctic University of Norway. SfB is hosting the UiT node of ELIXIR Norway. The MarRef, MarDb, MarFun and MarCat contextual databases are built by compiling data from a number of public available sequence, taxonomy and literature databases in a semi-automatic fashion.

Homepage https://mmp.sfb.uit.no/databases/

Countries that developed this resource Norway

Created in 2017

Taxonomic range

Bacteria

Fungi

Knowledge Domains

Subjects

How to cite this record FAIRsharing.org: MAR; MAR databases; DOI: https://doi.org/10.25504/FAIRsharing.SnTbUa; Last edited: Dec. 19, 2019, 11:06 a.m.; Last accessed: Jan 23 2021 10:44 a.m.

Publication for citation The MAR databases: development and implementation of databases specific for marine metagenomics Klemetsen T, Raknes IA, Fu J, Agafonov A, Balasundaram SV, Tartari G, Robertsen E, Willassen NP; NAR ; 2017; 10.1093/nar/gkx1036;

This record is maintained by nilspw ORCID

Record added: Aug. 27, 2019, 7:57 p.m.
Record updated: Nov. 5, 2019, 6:30 p.m. by The FAIRsharing Team.

Show edit history

Edits to 'https://fairsharing.org/FAIRsharing.SnTbUa' by 'The FAIRsharing Team' at 18:30, 05 Nov 2019 (approved):

	'licences' has been modified:
		Before:
		After:
			Creative Commons Attribution-NoDerivatives 4.0 International (CC BY-ND 4.0)|https://creativecommons.org/licenses/by-nd/4.0/|Data
		Added:
			Creative Commons Attribution-NoDerivatives 4.0 International (CC BY-ND 4.0)|https://creativecommons.org/licenses/by-nd/4.0/|Data
		Removed:

Edits to 'https://fairsharing.org/FAIRsharing.SnTbUa' by 'The FAIRsharing Team' at 16:52, 05 Nov 2019 (approved):

	'organizations' has been modified:
		Before:
			UiT The Arctic university of Norway|https://uit.no|Maintains
		After:
			UiT The Arctic university of Norway|https://uit.no|Maintains
			ELIXIR Norway|http://salmobase.org/www.bioinfo.no|Maintains,Funds
			ELIXIR-EXCELERATE programme, ELIXIR-HUB, UK|https://www.elixir-europe.org/about-us/how-funded/eu-projects/excelerate|Funds
			Horizon 2020 Programme of the European Union - EMBRIC|https://ec.europa.eu/programmes/horizon2020/|Funds
			The Research Council of Norway|http://www.forskningsradet.no/en/Home_page/1177315753906|Funds
		Added:
			ELIXIR Norway|http://salmobase.org/www.bioinfo.no|Maintains,Funds
			ELIXIR-EXCELERATE programme, ELIXIR-HUB, UK|https://www.elixir-europe.org/about-us/how-funded/eu-projects/excelerate|Funds
			Horizon 2020 Programme of the European Union - EMBRIC|https://ec.europa.eu/programmes/horizon2020/|Funds
			The Research Council of Norway|http://www.forskningsradet.no/en/Home_page/1177315753906|Funds
		Removed:

	'standardsImplemented' has been modified:
		Before:
			Environment Ontology
			Evidence codes
			Minimum Information about a (Meta)Genome Sequence
			Gazetteer
		After:
			Environment Ontology
			Evidence codes
			Minimum Information about a (Meta)Genome Sequence
			Gazetteer
			Minimum Information about any (x) Sequence
		Added:
			Minimum Information about any (x) Sequence
		Removed:

	'related_databases' has been modified:
		Before:
		After:
			European Nucleotide Archive
			Reference Sequence Database
			SILVA
		Added:
			European Nucleotide Archive
			Reference Sequence Database
			SILVA
		Removed:

	'supportLinks' has been modified:
		Before:
		After:
			help|https://mmp.sfb.uit.no/help/#/
			online documentation|https://mmp.sfb.uit.no/documentation/#/
			online documentation|https://mmp.sfb.uit.no/community/
		Added:
			help|https://mmp.sfb.uit.no/help/#/
			online documentation|https://mmp.sfb.uit.no/documentation/#/
			online documentation|https://mmp.sfb.uit.no/community/
		Removed:

	'description' has been modified:
		Before: The MAR databases is a collection of manually curated marine microbial contextual and sequence databases.
		After: The MAR databases is a collection of manually curated marine microbial contextual and sequence databases, based at the Marine Metagenomics Portal. This was developed as a part of the ELIXIR EXCELERATE project in 2017 and is maintained by The Center for Bioinformatics (SfB) at the UiT The Arctic University of Norway. SfB is hosting the UiT node of ELIXIR Norway. The MarRef, MarDb, MarFun and MarCat contextual databases are built by compiling data from a number of public available sequence, taxonomy and literature databases in a semi-automatic fashion.

	'onto_disciplines' has been modified:
		Before:
			Marine Biology
		After:
			Genomics
			Marine Biology
			Metagenomics
		Added:
			Genomics
			Metagenomics
		Removed:

	'onto_domains' has been modified:
		Before:
			marine environment
			marine metagenome
		After:
			DNA sequence
			Genome annotation
			Metagenome
			marine environment
			marine metagenome
		Added:
			DNA sequence
			Genome annotation
			Metagenome
		Removed:

	'grants' has been modified:
		Before:
		After:
			208481
			270068
			654008
			676559
		Added:
			208481
			270068
			654008
			676559
		Removed:

Edits to 'https://fairsharing.org/FAIRsharing.SnTbUa' by 'The FAIRsharing Team' at 16:52, 05 Nov 2019 (approved):

	'organizations' has been modified:
		Before:
			UiT The Arctic university of Norway|https://uit.no|Maintains
		After:
			UiT The Arctic university of Norway|https://uit.no|Maintains
			ELIXIR Norway|http://salmobase.org/www.bioinfo.no|Maintains,Funds
			ELIXIR-EXCELERATE programme, ELIXIR-HUB, UK|https://www.elixir-europe.org/about-us/how-funded/eu-projects/excelerate|Funds
			Horizon 2020 Programme of the European Union - EMBRIC|https://ec.europa.eu/programmes/horizon2020/|Funds
			The Research Council of Norway|http://www.forskningsradet.no/en/Home_page/1177315753906|Funds
		Added:
			ELIXIR Norway|http://salmobase.org/www.bioinfo.no|Maintains,Funds
			ELIXIR-EXCELERATE programme, ELIXIR-HUB, UK|https://www.elixir-europe.org/about-us/how-funded/eu-projects/excelerate|Funds
			Horizon 2020 Programme of the European Union - EMBRIC|https://ec.europa.eu/programmes/horizon2020/|Funds
			The Research Council of Norway|http://www.forskningsradet.no/en/Home_page/1177315753906|Funds
		Removed:

	'standardsImplemented' has been modified:
		Before:
			Environment Ontology
			Evidence codes
			Minimum Information about a (Meta)Genome Sequence
			Gazetteer
		After:
			Environment Ontology
			Evidence codes
			Minimum Information about a (Meta)Genome Sequence
			Gazetteer
			Minimum Information about any (x) Sequence
		Added:
			Minimum Information about any (x) Sequence
		Removed:

	'related_databases' has been modified:
		Before:
		After:
			European Nucleotide Archive
			Reference Sequence Database
			SILVA
		Added:
			European Nucleotide Archive
			Reference Sequence Database
			SILVA
		Removed:

	'supportLinks' has been modified:
		Before:
		After:
			help|https://mmp.sfb.uit.no/help/#/
			online documentation|https://mmp.sfb.uit.no/documentation/#/
			online documentation|https://mmp.sfb.uit.no/community/
		Added:
			help|https://mmp.sfb.uit.no/help/#/
			online documentation|https://mmp.sfb.uit.no/documentation/#/
			online documentation|https://mmp.sfb.uit.no/community/
		Removed:

	'description' has been modified:
		Before: The MAR databases is a collection of manually curated marine microbial contextual and sequence databases.
		After: The MAR databases is a collection of manually curated marine microbial contextual and sequence databases, based at the Marine Metagenomics Portal. This was developed as a part of the ELIXIR EXCELERATE project in 2017 and is maintained by The Center for Bioinformatics (SfB) at the UiT The Arctic University of Norway. SfB is hosting the UiT node of ELIXIR Norway. The MarRef, MarDb, MarFun and MarCat contextual databases are built by compiling data from a number of public available sequence, taxonomy and literature databases in a semi-automatic fashion.

	'onto_disciplines' has been modified:
		Before:
			Marine Biology
		After:
			Genomics
			Marine Biology
			Metagenomics
		Added:
			Genomics
			Metagenomics
		Removed:

	'onto_domains' has been modified:
		Before:
			marine environment
			marine metagenome
		After:
			DNA sequence
			Genome annotation
			Metagenome
			marine environment
			marine metagenome
		Added:
			DNA sequence
			Genome annotation
			Metagenome
		Removed:

	'grants' has been modified:
		Before:
		After:
			208481
			270068
			654008
			676559
		Added:
			208481
			270068
			654008
			676559
		Removed:

Support

General

help	Help
online documentation	Online documentation
online documentation	Community page

Additional Information

Contact

Nils Peder Willassen ORCID

Tools

No tools defined

Access / Retrieve Data

Conditions of Use

Applies to: Data use

Creative Commons Attribution-NoDerivatives 4.0 International (CC BY-ND 4.0)

Publications

The MAR databases: development and implementation of databases specific for marine metagenomics

Klemetsen T, Raknes IA, Fu J, Agafonov A, Balasundaram SV, Tartari G, Robertsen E, Willassen NP
NAR 2017

View Paper (PubMed) View Publication

Related Standards

Reporting Guidelines

Terminology Artifacts

Models and Formats

No syntax standards defined

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined

Related Databases

Implementing Policies

This record is not implemented by any policy.

Credit

Record Maintainer

This record is maintained by nilspw ORCID

Funds

ELIXIR-EXCELERATE programme, ELIXIR-HUB, UK (Government body)
Horizon 2020 Programme of the European Union - EMBRIC (Government body)
The Research Council of Norway (Government body)
ELIXIR Norway (Government body)

Maintains

UiT The Arctic University of Norway (University) Lead
ELIXIR Norway (Government body)

Grant Number(s)

208481 (The Research Council of Norway)
270068 (ELIXIR Norway)
654008 (Horizon 2020 Programme of the European Union - EMBRIC)
676559 (ELIXIR-EXCELERATE programme, ELIXIR-HUB, UK)

MAR databases

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