Cooler file format
Countries that developed this resource United States
Created in 2016
How to cite this record FAIRsharing.org: .cool; Cooler file format; DOI: https://doi.org/10.25504/FAIRsharing.VJDEtl; Last edited: Sept. 20, 2019, 11:52 a.m.; Last accessed: Apr 10 2021 3:59 p.m.
Publication for citation Cooler: scalable storage for Hi-C data and other genomically-labeled arrays Abdennur, N and Mirny, L; bioRxiv ; 2019.
Record added: April 24, 2019, 4:37 p.m.
Record updated: April 29, 2019, 9:32 a.m. by The FAIRsharing Team.
Edits to 'https://fairsharing.org/FAIRsharing.VJDEtl' by 'The FAIRsharing Team' at 09:32, 29 Apr 2019 (not approved): 'supportLinks' has been modified: Before: online documentation|https://cooler.readthedocs.io/en/latest/index.html After: forum|https://github.com/mirnylab/cooler/issues online documentation|https://cooler.readthedocs.io/en/latest/index.html online documentation|https://github.com/mirnylab/cooler Added: forum|https://github.com/mirnylab/cooler/issues online documentation|https://github.com/mirnylab/cooler Removed: 'licences' has been modified: Before: After: BSD-3-Clause License (Modified BSD License) (New BSD License)|https://opensource.org/licenses/BSD-3-Clause|Data Added: BSD-3-Clause License (Modified BSD License) (New BSD License)|https://opensource.org/licenses/BSD-3-Clause|Data Removed: 'onto_domains' has been modified: Before: After: chromosome Added: chromosome Removed: 'related_standards' has been modified: Before: Pairs file format After: Pairs file format Hierarchical Data Format (HDF) Added: Hierarchical Data Format (HDF) Removed: 'taxonomies' has been modified: Before: Not applicable After: All Added: All Removed: Not applicable 'homepage' has been modified: Before: https://cooler.readthedocs.io/en/latest/ After: https://cooler.readthedocs.io/en/latest/datamodel.html
No XSD schemas defined
Conditions of UseApplies to: Data use
Cooler: scalable storage for Hi-C data and other genomically-labeled arrays
Abdennur, N and Mirny, L
No guidelines defined
No semantic standards defined
Models and Formats
No identifier schema standards defined
No metrics standards defined
The 4D Nucleome Data Portal (4DN) hosts data generated by the 4DN Network and other reference nucleomics data sets, and an expanding tool set for open data processing and visualization. It is a platform to search, visualize, and download nucleomics data.
This record is not implemented by any policy.