Cooler file format
Abbreviation: .cool
Homepage https://cooler.readthedocs.io/en/latest/datamodel.html
Countries that developed this resource United States
Created in 2016
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How to cite this record FAIRsharing.org: .cool; Cooler file format; DOI: https://doi.org/10.25504/FAIRsharing.VJDEtl; Last edited: Sept. 20, 2019, 11:52 a.m.; Last accessed: Jan 28 2021 3:27 p.m.
Publication for citation Cooler: scalable storage for Hi-C data and other genomically-labeled arrays Abdennur, N and Mirny, L; bioRxiv ; 2019.
Record added: April 24, 2019, 4:37 p.m.
Record updated:
April 29, 2019, 9:32 a.m. by The FAIRsharing Team.
forum | GitHub Issue Tracker |
online documentation | Documentation |
online documentation | GitHub Repository |
Additional Information
Contact | Nezar Abdennur ORCID |
Cooler | https://mirnylab.github.io/cooler/ | 0.8.5 |
4DN Hi-C Processing Pipeline (Docker image) | https://hub.docker.com/r/duplexa/4dn-hic/ | v43 |
HiGlass | https://higlass.io/ | 1.5 |
No XSD schemas defined
Conditions of Use
Applies to: Data useCooler: scalable storage for Hi-C data and other genomically-labeled arrays
Abdennur, N and Mirny, L
bioRxiv 2019
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No semantic standards defined
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The 4D Nucleome Data Portal (4DN) hosts data generated by the 4DN Network and other reference nucleomics data sets, and an expanding tool set for open data processing and visualization. It is a platform to search, visualize, and download nucleomics data.
This record is not implemented by any policy.
Record Maintainer
This record is maintained by 4DNucleome DCIC (4dn_dcic)
Funds
NIH Common Fund, USA (Government body)
Maintains
Mirny Lab (Lab) Lead
Grant Number(s)
U54-DK107980-01 (NIH Common Fund, USA)