Clinical Interpretation of Variants in Cancer
Abbreviation:CIViC
Homepage https://civicdb.org/
Countries that developed this resource United States
Created in 2015
Taxonomic range
Knowledge Domains
Subjects
How to cite this record FAIRsharing.org: CIViC; Clinical Interpretation of Variants in Cancer; DOI: https://doi.org/10.25504/FAIRsharing.Yedluf; Last edited: March 21, 2019, 3:53 p.m.; Last accessed: Feb 27 2020 5:49 p.m.
Publication for citation CIViC is a community knowledgebase for expert crowdsourcing the clinical interpretation of variants in cancer. Griffith M,Spies NC,Krysiak K,McMichael JF,Coffman AC,Danos AM,Ainscough BJ,Ramirez CA,Rieke DT,Kujan L,Barnell EK,Wagner AH,Skidmore ZL,Wollam A,Liu CJ,Jones MR,Bilski RL,Lesurf R,Feng YY,Shah NM,Bonakdar M,Trani L,Matlock M,Ramu A,Campbell KM,Spies GC,Graubert AP,Gangavarapu K,Eldred JM,Larson DE,Walker JR,Good BM,Wu C,Su AI,Dienstmann R,Margolin AA,Tamborero D,Lopez-Bigas N,Jones SJ,Bose R,Spencer DH,Wartman LD,Wilson RK,Mardis ER,Griffith OL; Nat Genet ; 2017; 10.1038/ng.3774;
Record added: Feb. 22, 2019, 5:53 p.m.
Record updated:
March 4, 2019, 1:53 p.m. by The FAIRsharing Team.
| FAQ | FAQ |
| help | Introduction to CIViC |
| help | Glossary |
| help | CIViC contact page |
| online documentation | API documentation |
| online documentation | Community Information |
| online documentation | How to Contribute |
| online documentation | Statistics |
Additional Information
| Contact | Malachi Griffith ORCID |
Conditions of Use
Applies to: Data useData Release
| Download Data Releases | https://civicdb.org/releases |
Data Access
| Browse Variants | https://civicdb.org/browse/variants |
| Search Evidence | https://civicdb.org/search/evidence/ |
| Browse User Activity | https://civicdb.org/activity |
REST Web Services
| Genes endpoint | https://civicdb.org/api/genes |
| Variants endpoint | https://civicdb.org/api/variants |
| Evidence endpoint | https://civicdb.org/api/evidence_items |
| Variant groups endpoint | https://civicdb.org/api/variant_groups |
| Assertions endpoint | https://civicdb.org/api/assertions |
CIViC is a community knowledgebase for expert crowdsourcing the clinical interpretation of variants in cancer.
Griffith M,Spies NC,Krysiak K,McMichael JF,Coffman AC,Danos AM,Ainscough BJ,Ramirez CA,Rieke DT,Kujan L,Barnell EK,Wagner AH,Skidmore ZL,Wollam A,Liu CJ,Jones MR,Bilski RL,Lesurf R,Feng YY,Shah NM,Bonakdar M,Trani L,Matlock M,Ramu A,Campbell KM,Spies GC,Graubert AP,Gangavarapu K,Eldred JM,Larson DE,Walker JR,Good BM,Wu C,Su AI,Dienstmann R,Margolin AA,Tamborero D,Lopez-Bigas N,Jones SJ,Bose R,Spencer DH,Wartman LD,Wilson RK,Mardis ER,Griffith OL
Nat Genet 2017
Adapting crowdsourced clinical cancer curation in CIViC to the ClinGen minimum variant level data community-driven standards.
Danos AM,Ritter DI,Wagner AH,Krysiak K,Sonkin D,Micheel C,McCoy M,Rao S,Raca G,Boca SM,Roy A,Barnell EK,McMichael JF,Kiwala S,Coffman AC,Kujan L,Kulkarni S,Griffith M,Madhavan S,Griffith OL
Hum Mutat 2018
Reporting Guidelines
No guidelines defined
Terminology Artifacts
No semantic standards defined
Models and Formats
No syntax standards defined
Identifier Schemas
No identifier schema standards defined
Metrics
No metrics standards defined
No related databases defined
This record is not implemented by any policy.
Record Maintainer
Funds
NIH (Government body)
Maintains
McDonnell Genome Institute at Washington University School of Medicine, St, Louis, MO, USA (Research institute) Lead
Washington University in St Louis School of Medicine, USA (University)
Grant Number(s)
U01CA20993601 (NIH)
