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Minimal Information about a high throughput SEQuencing Experiment

Abbreviation: MINSEQE

Recommended

General Information

MINSEQE describes the Minimum Information about a high-throughput nucleotide SEQuencing Experiment that is needed to enable the unambiguous interpretation and facilitate reproduction of the results of the experiment. By analogy to the MIAME guidelines for microarray experiments, adherence to the MINSEQE guidelines will improve integration of multiple experiments across different modalities, thereby maximising the value of high-throughput research.

Homepage http://fged.org/projects/minseqe/

Countries that developed this resource Worldwide

Created in 2008

Taxonomic range

All

Knowledge Domains

Subjects

In the following recommendations:

How to cite this record FAIRsharing.org: MINSEQE; Minimal Information about a high throughput SEQuencing Experiment; DOI: https://doi.org/10.25504/FAIRsharing.a55z32; Last edited: March 29, 2021, 11:03 a.m.; Last accessed: Jul 28 2021 2:51 a.m.

Record updated: March 29, 2021, 11:03 a.m. by The FAIRsharing Team.

Show edit history

Edits to 'https://fairsharing.org/FAIRsharing.a55z32' by 'The FAIRsharing Team' at 11:03, 29 Mar 2021 (approved):

	'supportLinks' has been modified:
		Before:
			blog|https://www.youtube.com/user/fgedsociety/
			contact form|http://fged.org/about-us/
			forum|https://www.facebook.com/FGED.Society
			mailing list|http://fged.org/about-us/mailing-lists/
			online documentation|http://fged.org/site_media/pdf/MINSEQE_1.0.pdf
			online documentation|http://mibbi.sourceforge.net/projects/MINSEQE.shtml
			twitter|@FGED
		After:
			blog|https://www.youtube.com/user/fgedsociety/
			contact form|http://fged.org/about-us/
			forum|https://www.facebook.com/FGED.Society
			mailing list|http://fged.org/about-us/mailing-lists/
			online documentation|http://mibbi.sourceforge.net/projects/MINSEQE.shtml
			twitter|@FGED
		Added:
		Removed:
			online documentation|http://fged.org/site_media/pdf/MINSEQE_1.0.pdf

	'dataProcesses' has been modified:
		Before:
		After:
			Download Specification, data release, http://fged.org/site_media/pdf/MINSEQE_1.0.pdf
		Added:
			Download Specification, data release, http://fged.org/site_media/pdf/MINSEQE_1.0.pdf
		Removed:

	'onto_domains' has been modified:
		Before:
			DNA sequence
			deoxyribonucleic acid
			ribonucleic acid
		After:
			ChIP-seq assay
			DNA sequence
			RNA-seq assay
			deoxyribonucleic acid
			next generation DNA sequencing
			ribonucleic acid
		Added:
			ChIP-seq assay
			RNA-seq assay
			next generation DNA sequencing
		Removed:

Edits to 'https://fairsharing.org/FAIRsharing.a55z32' by 'The FAIRsharing Team' at 07:17, 18 Jul 2018 (approved):

	'related_standards' has been modified:
		Before:
			bsg-s000070|Ontology for Biomedical Investigations
			bsg-s000080|MicroArray Gene Expression Tabular Format
			bsg-s000229|FASTQ Sequence and Sequence Quality Format
		After:
			bsg-s000070|Ontology for Biomedical Investigations
			bsg-s000080|MicroArray Gene Expression Tabular Format
			bsg-s000229|FASTQ Sequence and Sequence Quality Format
			bsg-s000177|Minimum Information About a Microarray Experiment
			bsg-s000070|Ontology for Biomedical Investigations
			bsg-s000078|Investigation Study Assay Tabular
		Added:
			bsg-s000177|Minimum Information About a Microarray Experiment
			bsg-s000078|Investigation Study Assay Tabular
		Removed:

Edits to 'https://fairsharing.org/FAIRsharing.a55z32' by 'The FAIRsharing Team' at 17:27, 13 Jul 2018 (approved):

	'related_standards' has been modified:
		Before:
			bsg-s000067|Microarray and Gene Expression Data Ontology
			bsg-s000177|Minimum Information About a Microarray Experiment
			bsg-s000229|FASTQ Sequence and Sequence Quality Format
		After:
			bsg-s000229|FASTQ Sequence and Sequence Quality Format
			bsg-s000070|Ontology for Biomedical Investigations
			bsg-s000080|MicroArray Gene Expression Tabular Format
			bsg-s000078|Investigation Study Assay Tabular
		Added:
			bsg-s000070|Ontology for Biomedical Investigations
			bsg-s000080|MicroArray Gene Expression Tabular Format
			bsg-s000078|Investigation Study Assay Tabular
		Removed:
			bsg-s000067|Microarray and Gene Expression Data Ontology
			bsg-s000177|Minimum Information About a Microarray Experiment

Edits to 'https://fairsharing.org/FAIRsharing.a55z32' by 'The FAIRsharing Team' at 11:14, 12 Jul 2018 (approved):

	'name' has been modified:
		Before: Minimal Information about a high throuput SEQuencing Experiment
		After: Minimal Information about a high throughput SEQuencing Experiment

In Collections

FAIRDOM Community Standards

Minimum Information for Biological and Biomedical Investigations

RDA Covid-19 WG Resources

Support

General

blog	FGED YouTube Channel
contact form	Contact Form
forum	Facebook
Mailing List	mailing list
online documentation	Original MIBBI Page
twitter	@FGED

Tools

No tools defined

Schemas

No XSD schemas defined

Access / Retrieve Data

Conditions of Use

Data Release

Download Specification

http://fged.org/site_media/pdf/MINSEQE_1.0.pdf

Publications

No publications available

Related Standards

Reporting Guidelines

Terminology Artifacts

No semantic standards defined

Models and Formats

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined

Related Databases (5)

ArrayExpress
ArrayExpress is a database of functional genomics experiments that can be queried and the data downloaded. It includes gene expression data from microarray and high throughput sequencing studies. Data is collected to MIAME and MINSEQE standards. Experiments are submitted directly to ArrayExpress or are imported from the NCBI GEO database.

The European Genome-phenome Archive
The European Genome-phenome Archive (EGA) allows you to explore datasets from genomic studies, provided by a range of data providers. Access to datasets must be approved by the specified Data Access Committee (DAC).

Sequence Read Archive
The Sequence Read Archive (SRA) stores raw sequencing data from the next generation of sequencing platforms Data submitted to SRA. It is organized using a metadata model consisting of six objects: study, sample, experiment, run, analysis and submission. The SRA study contains high-level information including goals of the study and literature references, and may be linked to the INSDC BioProject database.

Genome Sequence Archive
GSA is a data repository specialized for archiving raw sequence reads. It supports data generated from a variety of sequencing platforms ranging from Sanger sequencing machines to single-cell sequencing machines and provides data storing and sharing services free of charge for worldwide scientific communities. In addition to raw sequencing data, GSA also accommodates secondary analyzed files in acceptable formats (like BAM, VCF). Its user-friendly web interfaces simplify data entry and submitted data are roughly organized as two parts, viz., Metadata and File, where the former can be further assorted into BioProject, BioSample, Experiment and Run, and the latter contains raw sequence reads.

Genomic Expression Archive
Genomic Expression Archive (GEA) is a public database of functional genomics data such as gene expression, epigenetics and genotyping SNP array. Both microarray- and sequence-based data are accepted in the MAGE-TAB format in compliance with MIAME and MINSEQE guidelines, respectively. GEA issues accession numbers, E-GEAD-n to experiment and A-GEAD-n to array design.

Implementing Policies

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Maintains

Functional Genomics Data Society (FGED); MINSEQE working group (Consortium)

Minimal Information about a high throughput SEQuencing Experiment

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