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ready EMBRACE Data and Methods Ontology

Abbreviation: EDAM


General Information
EDAM (originally from “EMBRACE Data and Methods”) is an ontology of well established, familiar concepts that are prevalent within bioinformatics, including types of data and data identifiers, data formats, operations and topics.

Homepage http://edamontology.org

Countries that developed this resource Denmark , France , Norway , United Kingdom

Created in 2010

Taxonomic range




How to cite this record FAIRsharing.org: EDAM; EMBRACE Data and Methods Ontology; DOI: https://doi.org/10.25504/FAIRsharing.a6r7zs; Last edited: Jan. 5, 2021, 9:09 p.m.; Last accessed: Sep 20 2021 9:02 p.m.

Publication for citation  EDAM: an ontology of bioinformatics operations, types of data and identifiers, topics and formats. Ison J,Kalas M,Jonassen I,Bolser D,Uludag M,McWilliam H,Malone J,Lopez R,Pettifer S,Rice P; Bioinformatics ; 2013; 10.1093/bioinformatics/btt113;


This record is maintained by hmenager  ORCID

Record updated: Jan. 5, 2021, 3:40 p.m. by hmenager.

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Tools

    No tools defined


Schemas

No XSD schemas defined


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Applies to: Data use

Data Release

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Publications

EDAM: an ontology of bioinformatics operations, types of data and identifiers, topics and formats.

Ison J,Kalas M,Jonassen I,Bolser D,Uludag M,McWilliam H,Malone J,Lopez R,Pettifer S,Rice P
Bioinformatics 2013

View Paper (PubMed) View Publication

EDAM Ontology Display

View in BioPortal.


Disclaimer: This widget assumes the availability of the ontology resources in the NCBO BioPortal.



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Alliance of Genome Resources
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BioSimulations
BioSimulations is a web application for sharing and re-using biomodels, simulations, and visualizations of simulations results. BioSimulations supports a wide range of modeling frameworks (e.g., kinetic, constraint-based, and logical modeling), model formats (e.g., BNGL, CellML, SBML), and simulation tools (e.g., COPASI, libRoadRunner/tellurium, NFSim, VCell). BioSimulations aims to help researchers discover published models that might be useful for their research and quickly try them via a simple web-based interface.

bio.tools
bio.tools is a registry of information about bioinformatics software and data services. It was created to help researchers in biological and biomedical science to find and use such resources.

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This record is not implemented by any policy.


Credit

Record Maintainer

Funds

Grant Number(s)

  • 178885/V30 (The Research Council of Norway)

  • 284209 (European FP7 Capacities Specific Programme)

  • BB/G02264X/1 EMBOSS-BBR (Biotechnology and Biological Sciences Research Council (BBSRC), UK)

  • FP7-INFRA-2007-211601 (European FP7 EMBRACE project)

  • LHSG-CT-2004-512092 (European Commission FP6)