ProDom

General Information

ProDom is a comprehensive set of protein domain families automatically generated from the UniProt Knowledge Database.

Homepage http://prodom.prabi.fr/

Developed in France

Created in 2002

Taxonomic range

All

Knowledge Domains BETA

Subjects BETA

How to cite this record FAIRsharing.org: ProDom; ProDom; DOI: https://doi.org/10.25504/FAIRsharing.a8z6gz; Last edited: Jan. 8, 2019, 1:18 p.m.; Last accessed: Mar 22 2019 6:02 p.m.

Publication for citation ProDom: automated clustering of homologous domains. Servant F,Bru C,Carrere S,Courcelle E,Gouzy J,Peyruc D,Kahn D; Brief Bioinform ; 2002.

Record updated: Aug. 5, 2018, 9:25 p.m. by The FAIRsharing Team.

Show edit history

Edits to 'https://fairsharing.org/FAIRsharing.a8z6gz' by 'The FAIRsharing Team' at 21:25, 05 Aug 2018 (approved):

	'related_databases' has been modified:
		Before:
			ProtoNet
			UniProt Knowledgebase
		After:
			ProtoNet
			Integrated resource of protein families, domains and functional sites
			UniProt Knowledgebase
		Added:
			Integrated resource of protein families, domains and functional sites
		Removed:

	'tools' has been modified:
		Before:
		After:
			MolScript||http://avatar.se/molscript/
			mkdom/Xdom||http://prodomweb.univ-lyon1.fr/prodom/xdom/
			ESPript||http://espript.ibcp.fr/ESPript/cgi-bin/ESPript.cgi
		Added:
			MolScript||http://avatar.se/molscript/
			mkdom/Xdom||http://prodomweb.univ-lyon1.fr/prodom/xdom/
			ESPript||http://espript.ibcp.fr/ESPript/cgi-bin/ESPript.cgi
		Removed:

	'publications' has been modified:
		Before:
			The ProDom database of protein domain families: more emphasis on 3D|Bru C., Courcelle E., Carrre S., Beausse Y., Dalmar S., Kahn D., |Nucleic Acids Res.|2005
		After:
			The ProDom database of protein domain families: more emphasis on 3D|Bru C., Courcelle E., Carrre S., Beausse Y., Dalmar S., Kahn D., |Nucleic Acids Res.|2005
			ProDom: automated clustering of homologous domains.|Servant F,Bru C,Carrere S,Courcelle E,Gouzy J,Peyruc D,Kahn D|Brief Bioinform|2002
		Added:
			ProDom: automated clustering of homologous domains.|Servant F,Bru C,Carrere S,Courcelle E,Gouzy J,Peyruc D,Kahn D|Brief Bioinform|2002
		Removed:

Edits to 'https://fairsharing.org/FAIRsharing.a8z6gz' by 'The FAIRsharing Team' at 21:08, 08 Dec 2016 (approved):

	'name' has been modified:
		Before: ProDom; a protein domain database
		After: ProDom

Support

General

help	http://prodom.prabi.fr/prodom/current/do ...
online documentation	http://prodom.prabi.fr/prodom/current/ht ...

Additional Information

Contact	General Help
Identifiers.org	MIR:00000117

Tools

MolScript	http://avatar.se/molscript/
mkdom/Xdom	http://prodomweb.univ-lyon1.fr/prodom/xdom/
ESPript	http://espript.ibcp.fr/ESPript/cgi-bin/ESPript.cgi

Access / Retrieve Data

Conditions of Use

Applies to: Data use

Fee for commercial use
Free for non-commercial use
Prodom Database License

Data Access

Download	http://prodom.prabi.fr/prodom/current/html/download.php
search	http://prodom.prabi.fr/prodom/current/html/form.php

Publications

The ProDom database of protein domain families: more emphasis on 3D

Bru C., Courcelle E., Carrère S., Beausse Y., Dalmar S., Kahn D.,
Nucleic Acids Res. 2005

View Paper (PubMed)

ProDom: automated clustering of homologous domains.

Servant F,Bru C,Carrere S,Courcelle E,Gouzy J,Peyruc D,Kahn D
Brief Bioinform 2002

View Paper (PubMed)

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

No semantic standards defined

Models and Formats

No syntax standards defined

Identifier Schemas

No identifier schema standards defined

Metrics

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Related Databases

Implementing Policies

This record is not implemented by any policy.

Credit

Record Maintainer

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Funds

PRABI Rhone-Alpes Bioinformatics Center, France (Research institute)
Institut National de la Recherche Agronomique, France (Consortium)

Maintains

ProDom Team
National Centre for Scientific Research (CNRS), Paris, France (Government body)

ProDom

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