DES-TOMATO

General Information

DES-TOMATO is a topic-specific literature exploration system developed to allow the exploration of information related to tomato. The information provided in DES-TOMATO is obtained through the text-mining of available scientific literature, namely full-length articles in PubMed Central and titles and abstracts in PubMed.

Homepage https://www.cbrc.kaust.edu.sa/des_tomato/home/index.php

Countries that developed this resource Saudi Arabia

Created in 2017

Taxonomic range

Solanum lycopersicum

Knowledge Domains

Subjects

User-defined Tags

Knowledge Mining

How to cite this record FAIRsharing.org: DES-TOMATO; DES-TOMATO; DOI: https://doi.org/10.25504/FAIRsharing.abbexa; Last edited: Sept. 20, 2019, 11:51 a.m.; Last accessed: Oct 01 2020 10:39 p.m.

Publication for citation DES-TOMATO: A Knowledge Exploration System Focused On Tomato Species. Salhi A,Negrao S,Essack M,Morton MJL,Bougouffa S,Razali R,Radovanovic A,Marchand B,Kulmanov M,Hoehndorf R,Tester M,Bajic VB; Sci Rep ; 2017; 10.1038/s41598-017-05448-0;

This record is maintained by bajicv ORCID

Record added: July 17, 2019, 11:44 a.m.
Record updated: July 17, 2019, 1:03 p.m. by bajicv.

Show edit history

Edits to 'https://fairsharing.org/FAIRsharing.abbexa' by 'bajicv' at 13:03, 17 Jul 2019 (approved):

	'onto_domains' has been modified:
		Before:
			Knowledge representation role
			Text mining
			publication
		After:
			Text mining
			publication
		Added:
		Removed:
			Knowledge representation role

Edits to 'https://fairsharing.org/FAIRsharing.abbexa' by 'bajicv' at 13:02, 17 Jul 2019 (approved):

	'user_defined_tags' has been modified:
		Before:
		After:
			Knowledge Mining
		Added:
			Knowledge Mining
		Removed:

	'onto_domains' has been modified:
		Before:
			Text mining
			publication
		After:
			Knowledge representation role
			Text mining
			publication
		Added:
			Knowledge representation role
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Edits to 'https://fairsharing.org/FAIRsharing.abbexa' by 'The FAIRsharing Team' at 11:45, 17 Jul 2019 (approved):

	'standardsImplemented' has been modified:
		Before:
			Flora Phenotype Ontology
			Chemical Entities of Biological Interest
			Enzyme Commission Number
			Gene Ontology
			NCBI Taxonomy
		After:
			Flora Phenotype Ontology
			Chemical Entities of Biological Interest
			Enzyme Commission Number
			Gene Ontology
			NCBI Taxonomy
			Plant Ontology
			Plant Trait Ontology
			Plant Experimental Condition Ontology
			Solanaceae Phenotype Ontology
		Added:
			Plant Ontology
			Plant Trait Ontology
			Plant Experimental Condition Ontology
			Solanaceae Phenotype Ontology
		Removed:

Support

General

help	Software Manual
help	Video Tutorial
online documentation	About DES-TOMATO

Additional Information

Contact

Vladimir Bajic

Tools

No tools defined

Access / Retrieve Data

Conditions of Use

Applies to: Data use

KAUST Terms of Use

Data Access

Browse Enriched Terms	https://www.cbrc.kaust.edu.sa/des_tomato/mykbase/terms.php
Browse Enriched Term Pairs	https://www.cbrc.kaust.edu.sa/des_tomato/mykbase/termpairs.php
Browse Hypotheses	https://www.cbrc.kaust.edu.sa/des_tomato/mykbase/hypotheses.php
Browse KOBAS Pathways	https://www.cbrc.kaust.edu.sa/des_tomato/mykbase/kobas_enrichment.php
Browse Literature	https://www.cbrc.kaust.edu.sa/des_tomato/mykbase/showpubmed.php

Publications

DES-TOMATO: A Knowledge Exploration System Focused On Tomato Species.

Salhi A,Negrao S,Essack M,Morton MJL,Bougouffa S,Razali R,Radovanovic A,Marchand B,Kulmanov M,Hoehndorf R,Tester M,Bajic VB
Sci Rep 2017

View Paper (PubMed) View Publication

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

Models and Formats

No syntax standards defined

Identifier Schemas

Enzyme Commission Number

Metrics

No metrics standards defined

Related Databases

Implementing Policies

This record is not implemented by any policy.

Credit

Record Maintainer

This record is maintained by bajicv ORCID

Maintains

King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia (University) Lead

DES-TOMATO

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