databases > DOI:10.25504/FAIRsharing.ae956n
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ready Integrated Microbial Genomes And Microbiomes

Abbreviation:IMG/M

General Information
The Integrated Microbial Genomes (IMG/M) aims to support the annotation, analysis and distribution of microbial genome and microbiome datasets sequenced at DOE's Joint Genome Institute (JGI). It also serves as a community resource for analysis and annotation of genome and metagenome datasets in a comprehensive comparative context. The IMG data warehouse integrates genome and metagenome datasets provided by IMG users with a set of publicly available genome and metagenome datasets. IMG/M is also open to scientists worldwide for the annotation, analysis, and distribution of their own genome and microbiome datasets, as long as they agree with the IMG/M data release policy and follow the metadata requirements for integrating data into IMG/M.




How to cite this record FAIRsharing.org: IMG/M; Integrated Microbial Genomes And Microbiomes; DOI: https://doi.org/10.25504/FAIRsharing.ae956n; Last edited: Oct. 12, 2020, 1:19 p.m.; Last accessed: Oct 27 2021 2:49 p.m.

Publication for citation  IMG/M v.5.0: an integrated data management and comparative analysis system for microbial genomes and microbiomes. Chen IA,Chu K,Palaniappan K,Pillay M,Ratner A,Huang J,Huntemann M,Varghese N,White JR,Seshadri R,Smirnova T,Kirton E,Jungbluth SP,Woyke T,Eloe-Fadrosh EA,Ivanova NN,Kyrpides NC; Nucleic Acids Res ; 2018; 10.1093/nar/gky901;


Record updated: Oct. 12, 2020, 1:10 p.m. by The FAIRsharing Team.

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Publications

An experimental metagenome data management and analysis system.

Markowitz VM., Ivanova N., Palaniappan K., Szeto E., Korzeniewski F., Lykidis A., Anderson I., Mavromatis K., Mavrommatis K., Kunin V., Garcia Martin H., Dubchak I., Hugenholtz P., Kyrpides NC.,
Bioinformatics 2006

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IMG/M: a data management and analysis system for metagenomes.

Markowitz VM., Ivanova NN., Szeto E., Palaniappan K., Chu K., Dalevi D., Chen IM., Grechkin Y., Dubchak I., Anderson I., Lykidis A., Mavromatis K., Hugenholtz P., Kyrpides NC.,
Nucleic Acids Res. 2008

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IMG 4 version of the integrated microbial genomes comparative analysis system.

Markowitz VM,Chen IM,Palaniappan K,Chu K,Szeto E,Pillay M,Ratner A,Huang J,Woyke T,Huntemann M,Anderson I,Billis K,Varghese N,Mavromatis K,Pati A,Ivanova NN,Kyrpides NC
Nucleic Acids Res 2013

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IMG/M v.5.0: an integrated data management and comparative analysis system for microbial genomes and microbiomes.

Chen IA,Chu K,Palaniappan K,Pillay M,Ratner A,Huang J,Huntemann M,Varghese N,White JR,Seshadri R,Smirnova T,Kirton E,Jungbluth SP,Woyke T,Eloe-Fadrosh EA,Ivanova NN,Kyrpides NC
Nucleic Acids Res 2018

View Paper (PubMed) View Publication