The Gene Index Project

Abbreviation:TIGR_TGI

General Information

This record was deprecated on Dec. 23, 2016 for the following reason(s): As of July 2014 the resource is no longer being maintained as funding ended in 2010.

The goal of The Gene Index Project is to use the available EST and gene sequences, along with the reference genomes wherever available, to provide an inventory of likely genes and their variants and to annotate these with information regarding the functional roles played by these genes and their products.

Homepage http://compbio.dfci.harvard.edu/tgi/

Countries that developed this resource United States

Taxonomic range

All

Knowledge Domains

Subjects

How to cite this record FAIRsharing.org: TIGR_TGI; The Gene Index Project; DOI: https://doi.org/10.25504/FAIRsharing.aftff2; Last edited: Jan. 8, 2019, 1:17 p.m.; Last accessed: Nov 27 2020 12:30 a.m.

Record updated: June 14, 2017, 4:04 p.m. by The FAIRsharing Team.

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Edits to 'https://fairsharing.org/FAIRsharing.aftff2' by 'The FAIRsharing Team' at 01:40, 23 Dec 2016 (approved):

	'contactName' has been modified:
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			John Quackenbush
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Edits to 'https://fairsharing.org/FAIRsharing.aftff2' by 'The FAIRsharing Team' at 17:59, 21 Sep 2016 (approved):

	'in_curation' has been modified:
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		After: on Publication List has changed:  Previous values: New values:  The TIGR Gene Indices: clustering and assembling EST and known genes and integration with eukaryotic genomes. The TIGR gene indices: reconstruction and representation of expressed gene sequences. Organisations have changed:  Previous values: Dana-Farber Cancer Institute|BCB|USA New values:  Dana-Farber Cancer Institute|BCB|USA Harvard University|Boston|Massachusetts|USA U.S. Department of Energy|Office of Science US National Institutes of Health (NIH) US National Science Foundation (NSF)

Edits to 'https://fairsharing.org/FAIRsharing.aftff2' by 'The FAIRsharing Team' at 16:20, 21 Sep 2016 (approved):

	'in_curation' has been modified:
		Before: False
		After: on

Support

General

FAQ	http://compbio.dfci.harvard.edu/tgi/gifa ...
contact form	http://compbio.dfci.harvard.edu/cgi-bin/ ...

Additional Information

Contact

John Quackenbush ORCID

Tools

BLAST

http://compbio.dfci.harvard.edu/tgi/ncbi/blast/blast.html

Access / Retrieve Data

Conditions of Use

Applies to: Data use

Open Data Commons (ODC) Public Domain Dedication and Licence (PDDL) 1.0
Attribution required

Data Access

search	http://compbio.dfci.harvard.edu/cgi-bin/magic/p1.pl
Download	ftp://occams.dfci.harvard.edu/pub/bio/tgi/data

Publications

The TIGR Gene Indices: clustering and assembling EST and known genes and integration with eukaryotic genomes.

Lee Y,Tsai J,Sunkara S,Karamycheva S,Pertea G,Sultana R,Antonescu V,Chan A,Cheung F,Quackenbush J
Nucleic Acids Res 2004

View Paper (PubMed) View Publication

The TIGR gene indices: reconstruction and representation of expressed gene sequences.

Quackenbush J,Liang F,Holt I,Pertea G,Upton J
Nucleic Acids Res 1999

View Paper (PubMed)

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

Gene Ontology

Models and Formats

FASTA Sequence Format

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined

Related Databases

No related databases defined

Implementing Policies

This record is not implemented by any policy.

Credit

Record Maintainer

This record is in need of a maintainer. If you login, you'll be able to claim this record.

Funds

National Institutes of Health (NIH), Bethesda, MD, USA (Government body)
United States Department of Energy, Office of Science, USA (Government body)
National Science Foundation (NSF), USA (Government body)

Maintains

Harvard University, Cambridge, MA, USA (University)
Dana-Farber Cancer Institute, USA (Research institute)

The Gene Index Project

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