MicroArray Gene Expression Tabular Format
How to cite this record FAIRsharing.org: MAGE-TAB; MicroArray Gene Expression Tabular Format; DOI: https://doi.org/10.25504/FAIRsharing.ak8p5g; Last edited: Jan. 8, 2019, 1:40 p.m.; Last accessed: Apr 21 2021 5:47 p.m.
Record updated: July 7, 2016, 10:40 p.m. by The FAIRsharing Team.
No XSD schemas defined
Conditions of Use
A simple spreadsheet-based, MIAME-supportive format for microarray data: MAGE-TAB.
BMC Bioinformatics 2006
Models and Formats
No syntax standards defined
No identifier schema standards defined
No metrics standards defined
BuG@Sbase is a microbial gene expression and comparative genomic database containing microarray datasets.
The Expression Atlas is a free resource providing information on gene expression patterns under different biological conditions in a variety of species. Gene expression data is re-analysed in-house to detect genes showing interesting baseline and differential expression patterns, allowing a user to ask questions such as "what are the genes expressed in normal human liver" and "what genes are differentially expressed between water-stressed rice plants and controls with normal watering?" The resource features proteomics data sets provided by collaborators for corroboration between gene- and protein-level expression results. The latest component, Single Cell Expression Atlas, systematically reanalyses and visualises single cell RNA-sequencing datasets and helps answer questions such as what cell population a gene can act as a marker gene.
ArrayExpress is a database of functional genomics experiments that can be queried and the data downloaded. It includes gene expression data from microarray and high throughput sequencing studies. Data is collected to MIAME and MINSEQE standards. Experiments are submitted directly to ArrayExpress or are imported from the NCBI GEO database.
Stanford Microarray Database
The Stanford Microarray Database is a repository a microarray based gene expression and comparative genomics data. This resource is no longer being maintained please us public repositories NCBI Gene Expression Omnibus or EBI Array Express
Catalogue of Somatic Mutations in Cancer
The Catalogue of Somatic Mutations in Cancer (COSMIC) is a database of manually-curated somatic mutation information relating to human cancers. The COSMIC database combines manually-curated data and genome-wide screen data.
Genomic Expression Archive
Genomic Expression Archive (GEA) is a public database of functional genomics data such as gene expression, epigenetics and genotyping SNP array. Both microarray- and sequence-based data are accepted in the MAGE-TAB format in compliance with MIAME and MINSEQE guidelines, respectively. GEA issues accession numbers, E-GEAD-n to experiment and A-GEAD-n to array design.
Scroll for more...
This record is not implemented by any policy.
This record is in need of a maintainer. If you login, you'll be able to claim this record.
Functional Genomics Data Society (FGED) (Consortium)