VIVO Integrated Semantic Framework Ontology

Abbreviation: VIVO-ISF

General Information

This record was deprecated on Feb. 7, 2021 for the following reason(s): This resource is no longer actively maintained, and has been superceded.

The VIVO Integrated Semantic Framework ontology (VIVO-ISF Ontology, sometimes also known as the VIVO Ontology) represents researchers in the context of their experience, outputs, interests, accomplishments, and associated institutions. VIVO-ISF provides a set of types (classes) and relationships (properties) to represent researchers and the full context in which they work. The larger VIVO software is an open source platform for research discovery. Content in any local VIVO installation may be maintained manually, brought into VIVO in automated ways from local systems of record, such as HR, grants, course, and faculty activity databases, or from database providers such as publication aggregators and funding agencies.

This record is replaced by:

VIVO Ontology

Homepage https://wiki.lyrasis.org/display/VIVODOC110x/Ontology+Reference

Countries that developed this resource United States

Created in 2014

Taxonomic range

All

Knowledge Domains

Subjects

User-defined Tags

Researcher data

How to cite this record FAIRsharing.org: VIVO-ISF; VIVO Integrated Semantic Framework Ontology; DOI: https://doi.org/10.25504/FAIRsharing.amf6me; Last edited: Feb. 7, 2021, 7:56 p.m.; Last accessed: Apr 11 2021 3:04 a.m.

Record updated: Feb. 7, 2021, 7:55 p.m. by The FAIRsharing Team.

Show edit history

Edits to 'https://fairsharing.org/FAIRsharing.amf6me' by 'The FAIRsharing Team' at 19:55, 07 Feb 2021 (approved):

	'status' has been modified:
		Before: RDY
		After: DEP

	'miriam_id' has been modified:
		Before: 
		After: None

Edits to 'https://fairsharing.org/FAIRsharing.amf6me' by 'The FAIRsharing Team' at 19:44, 07 Feb 2021 (approved):

	'organizations' has been modified:
		Before:
			CASRAI, Ottawa, ON, Canada|http://casrai.org|Maintains
			Duraspace|http://www.duraspace.org/|Maintains
			EuroCRIS, Den Haag, the Netherlands|http://www.eurocris.org|Maintains
			Open Research and Contributor ID Initiative (ORCID)|https://orcid.org|Maintains
		After:
			Lyrasis, Atlanta, GA, USA|https://www.lyrasis.org|Maintains
		Added:
			Lyrasis, Atlanta, GA, USA|https://www.lyrasis.org|Maintains
		Removed:
			CASRAI, Ottawa, ON, Canada|http://casrai.org|Maintains
			Duraspace|http://www.duraspace.org/|Maintains
			EuroCRIS, Den Haag, the Netherlands|http://www.eurocris.org|Maintains
			Open Research and Contributor ID Initiative (ORCID)|https://orcid.org|Maintains

	'supportLinks' has been modified:
		Before:
			blog|http://vivoweb.org/blog
			contact form|http://www.duraspace.org/contact
			email|info@duraspace.org
			mailing list|https://groups.google.com/forum/#!forum/openrif-community
			rss|http://vivoweb.org/rss
			twitter|@vivocollab
		After:
			blog|https://duraspace.org/vivo/news/
			online documentation|https://github.com/openrif/vivo-isf-ontology
			online documentation|https://wiki.lyrasis.org/display/VIVODOC110x/Rich+export+SPARQL+queries
			online documentation|https://wiki.lyrasis.org/display/VIVODOC110x/Ontology+Overview+%3A+Object+Properties
			online documentation|https://wiki.lyrasis.org/display/VIVODOC110x/VIVO+Classes
			online documentation|https://wiki.lyrasis.org/display/VIVODOC110x/Source+ontologies+for+VIVO
			online documentation|https://wiki.lyrasis.org/display/VIVODOC110x/VIVO+Ontology+Domain+Definition
		Added:
			blog|https://duraspace.org/vivo/news/
			online documentation|https://github.com/openrif/vivo-isf-ontology
			online documentation|https://wiki.lyrasis.org/display/VIVODOC110x/Rich+export+SPARQL+queries
			online documentation|https://wiki.lyrasis.org/display/VIVODOC110x/Ontology+Overview+%3A+Object+Properties
			online documentation|https://wiki.lyrasis.org/display/VIVODOC110x/VIVO+Classes
			online documentation|https://wiki.lyrasis.org/display/VIVODOC110x/Source+ontologies+for+VIVO
			online documentation|https://wiki.lyrasis.org/display/VIVODOC110x/VIVO+Ontology+Domain+Definition
		Removed:
			blog|http://vivoweb.org/blog
			contact form|http://www.duraspace.org/contact
			email|info@duraspace.org
			mailing list|https://groups.google.com/forum/#!forum/openrif-community
			rss|http://vivoweb.org/rss
			twitter|@vivocollab

	'user_defined_tags' has been modified:
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		After:
			Researcher data
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			Researcher data
		Removed:

	'dataProcesses' has been modified:
		Before:
		After:
			View Ontology Diagrams, data access, https://wiki.lyrasis.org/display/VIVODOC110x/Ontology+Diagrams
			Download (BioPortal), data release, https://bioportal.bioontology.org/ontologies/VIVO-ISF
		Added:
			View Ontology Diagrams, data access, https://wiki.lyrasis.org/display/VIVODOC110x/Ontology+Diagrams
			Download (BioPortal), data release, https://bioportal.bioontology.org/ontologies/VIVO-ISF
		Removed:

	'related_standards' has been modified:
		Before:
			eagle-i Research Resource Ontology
		After:
			eagle-i Research Resource Ontology
			VIVO Ontology for Researcher Discovery
			Basic Formal Ontology
			Cell Ontology
			Gene Ontology
			Information Artifact Ontology
			Ontology for Biomedical Investigations
			Ontology of Clinical Research
			OBO Relations Ontology
			SoftWare Ontology
			Sequence Ontology
			Simple Knowledge Organization System
			UBER anatomy ONtology
		Added:
			VIVO Ontology for Researcher Discovery
			Basic Formal Ontology
			Cell Ontology
			Gene Ontology
			Information Artifact Ontology
			Ontology for Biomedical Investigations
			Ontology of Clinical Research
			OBO Relations Ontology
			SoftWare Ontology
			Sequence Ontology
			Simple Knowledge Organization System
			UBER anatomy ONtology
		Removed:

	'homepage' has been modified:
		Before: https://wiki.lyrasis.org/display/VIVODOC111x/Ontology+Reference
		After: https://wiki.lyrasis.org/display/VIVODOC110x/Ontology+Reference

Edits to 'https://fairsharing.org/FAIRsharing.amf6me' by 'The FAIRsharing Team' at 10:45, 06 Feb 2021 (approved):

	'yearOfCreation' has been modified:
		Before: None
		After: 2014

	'homepage' has been modified:
		Before: http://vivoweb.org/
		After: https://wiki.lyrasis.org/display/VIVODOC111x/Ontology+Reference

	'description' has been modified:
		Before: VIVO is an open source platform for research discovery. The VIVO Integrated Semantic Framework ontology represents researchers in the context of their experience, outputs, interests, accomplishments, and associated institutions. VIVO-ISF provides a set of types (classes) and relationships (properties) to represent researchers and the full context in which they work. Content in any local VIVO installation may be maintained manually, brought into VIVO in automated ways from local systems of record, such as HR, grants, course, and faculty activity databases, or from database providers such as publication aggregators and funding agencies.
		After: The VIVO Integrated Semantic Framework ontology (VIVO-ISF Ontology, sometimes also known as the VIVO Ontology) represents researchers in the context of their experience, outputs, interests, accomplishments, and associated institutions. VIVO-ISF provides a set of types (classes) and relationships (properties) to represent researchers and the full context in which they work. The larger VIVO software is an open source platform for research discovery. Content in any local VIVO installation may be maintained manually, brought into VIVO in automated ways from local systems of record, such as HR, grants, course, and faculty activity databases, or from database providers such as publication aggregators and funding agencies.

	'onto_domains' has been modified:
		Before:
			Experiment report
			study design
		After:
			protocol
			study design
		Added:
			protocol
		Removed:
			Experiment report

Edits to 'https://fairsharing.org/FAIRsharing.amf6me' by 'The FAIRsharing Team' at 18:35, 02 Dec 2019 (approved):

	'contactEmail' has been modified:
		Before: info@duraspace.org
		After: mconlon@ufl.edu

	'onto_disciplines' has been modified:
		Before:
			Biomedical Science
			Life Science
		After:
			Biomedical Science
			Life Science
			Ontology and Terminology
		Added:
			Ontology and Terminology
		Removed:

	'contact' has been modified:
		Before: General Enquiries
		After: Michael Conlon

	'supportLinks' has been modified:
		Before:
			blog|http://vivoweb.org/blog
			contact form|http://www.duraspace.org/contact
			mailing list|https://groups.google.com/forum/#!forum/openrif-community
			rss|http://vivoweb.org/rss
			twitter|@vivocollab
		After:
			blog|http://vivoweb.org/blog
			contact form|http://www.duraspace.org/contact
			email|info@duraspace.org
			mailing list|https://groups.google.com/forum/#!forum/openrif-community
			rss|http://vivoweb.org/rss
			twitter|@vivocollab
		Added:
			email|info@duraspace.org
		Removed:

	'onto_domains' has been modified:
		Before:
		After:
			Experiment report
			study design
		Added:
			Experiment report
			study design
		Removed:

Edits to 'https://fairsharing.org/FAIRsharing.amf6me' by 'The FAIRsharing Team' at 18:23, 02 Dec 2019 (approved):

	'miriam_id' has been modified:
		Before: None
		After:

Edits to 'https://fairsharing.org/FAIRsharing.amf6me' by 'The FAIRsharing Team' at 23:13, 30 Nov 2016 (approved):

	'contactName' has been modified:
		Before:
			
		After:
			General Enquiries
			Organisations have changed: 
			Previous values:
			Duraspace
			New values: 
			Duraspace
			CASRAI
			EuroCRIS
			Open Research and Contributor ID Initiative (ORCID)
			Support links have changed: 
			Previous values:
			http://www.duraspace.org/contact
			New values: 
			http://www.duraspace.org/contact
			https://groups.google.com/forum/#!forum/openrif-community
			@vivocollab
			http://vivoweb.org/blog
			http://vivoweb.org/rss
			Licenses have changed: 
			Previous values:
			Creative Commons Attribution (CC-BY) 3.0
			New values: 
			Creative Commons Attribution (CC-BY) 4.0
		Added:
		Removed:

Support

General

blog	News
online documentation	GitHub Project
online documentation	About SPARQL Queries
online documentation	About VIVO-ISF Object Properties
online documentation	About VIVO-ISF Classes
online documentation	Source Ontologies
online documentation	Ontology Domain Information

Additional Information

Contact

Michael Conlon

External Links

Bioportal

http://bioportal.bioontology.org/ontologies/VIVO-ISF

Tools

VIVO	https://duraspace.org/vivo/download/

Schemas

No XSD schemas defined

Access / Retrieve Data

Conditions of Use

Applies to: Data use

Creative Commons Attribution 4.0 International (CC BY 4.0)

Data Release

Download (BioPortal)

https://bioportal.bioontology.org/ontologies/VIVO-ISF

Data Access

View Ontology Diagrams

https://wiki.lyrasis.org/display/VIVODOC110x/Ontology+Diagrams

Publications

No publications available

VIVO-ISF Ontology Display

View in BioPortal.

Disclaimer: This widget assumes the availability of the ontology resources in the NCBO BioPortal.

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

Models and Formats

Simple Knowledge Organization System

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined

Related Databases (0)

No Related Databases

Implementing Policies

This record is not implemented by any policy.

Credit

Record Maintainer

This record is in need of a maintainer. If you login, you'll be able to claim this record.

Maintains

Lyrasis, Atlanta, GA, USA (Company)

VIVO Integrated Semantic Framework Ontology

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