databases > DOI:10.25504/FAIRsharing.aqb4ne

ready CUBE-DB

General Information
Detection of functional divergence in human protein families. Cube-DB is a database of pre-evaluated conservation and specialization scores for residues in paralogous proteins belonging to multi-member families of human proteins. Protein family classification follows (largely) the classification suggested by HUGO Gene Nomenclature Committee. Sets of orthologous protein sequences were generated by mutual-best-hit strategy using full vertebrate genomes available in Ensembl. The scores, described on documentation page, are assigned to each individual residue in a protein, and presented in the form of a table (html or downloadable xls formats) and mapped, when appropriate, onto the related structure (Jmol, Pymol, Chimera).

Homepage http://epsf.bmad.bii.a-star.edu.sg/cube/db/html/home.html

Countries that developed this resource Singapore

Created in 2011

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How to cite this record FAIRsharing.org: CUBE-DB; CUBE-DB; DOI: https://doi.org/10.25504/FAIRsharing.aqb4ne; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 28 2021 5:59 a.m.


This record is maintained by ivanam

Record updated: Jan. 8, 2019, 10:09 a.m. by The FAIRsharing Team.

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Support

General

support email zhangzh@bii.a-star.edu.sg
online documentation http://epsf.bmad.bii.a-star.edu.sg/cube/ ...

Additional Information

Contact Ivana Mihalek

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Data Versioning

access to historical files upon request No link recorded

Data Release

annual release No link recorded

Data Curation

semi-manual curation No link recorded

Data Access

browse http://epsf.bmad.bii.a-star.edu.sg/cube/db/html/db_index.html
file download http://epsf.bmad.bii.a-star.edu.sg/cube/db/html/workdir_help.html



Publications

Determinants, discriminants, conserved residues--a heuristic approach to detection of functional divergence in protein families.

Bharatham K., Zhang ZH., Mihalek I.,
PLoS ONE 2011

View Paper (PubMed) View Publication

Cube-DB: detection of functional divergence in human protein families.

Zhang ZH,Bharatham K,Chee SM,Mihalek I
Nucleic Acids Res 2011

View Paper (PubMed) View Publication

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