Web Ontology Language
How to cite this record FAIRsharing.org: OWL; Web Ontology Language; DOI: https://doi.org/10.25504/FAIRsharing.atygwy; Last edited: Dec. 17, 2019, 5:06 p.m.; Last accessed: Sep 16 2021 9:59 p.m.
Record updated: Dec. 17, 2019, 4:55 p.m. by The FAIRsharing Team.
Edits to 'https://fairsharing.org/FAIRsharing.atygwy' by 'The FAIRsharing Team' at 16:55, 17 Dec 2019 (approved): 'onto_disciplines' has been modified: Before: Ontology and Terminology After: Computer Science Informatics Ontology and Terminology Added: Computer Science Informatics Removed:
Edits to 'https://fairsharing.org/FAIRsharing.atygwy' by 'The FAIRsharing Team' at 09:30, 17 Dec 2019 (approved): 'user_defined_tags' has been modified: Before: General purpose After: General purpose Semantic Added: Semantic Removed: 'miriam_id' has been modified: Before: None After: 'contactORCID' has been modified: Before: After: 0000-0001-5699-0515
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The UniProt Knowledgebase (UniProtKB) is the central hub for the collection of functional information on proteins, with accurate, consistent and rich annotation. In addition to capturing the core data mandatory for each UniProtKB entry (mainly, the amino acid sequence, protein name or description, taxonomic data and citation information), as much annotation information as possible is added. This includes widely accepted biological ontologies, classifications and cross-references, and clear indications of the quality of annotation in the form of evidence attribution of experimental and computational data. The UniProt Knowledgebase consists of two sections: a reviewed section containing manually-annotated records with information extracted from literature and curator-evaluated computational analysis (aka "UniProtKB/Swiss-Prot"), and an unreviewed section with computationally analyzed records that await full manual annotation (aka "UniProtKB/TrEMBL").
RegenBase is a knowledge base of SCI biology. RegenBase integrates curated literature-sourced facts and experimental details from publications, raw assay data profiling the effect of compounds on enzyme activity and cell growth, and structured SCI domain knowledge in the form of the first ontology for SCI, using Semantic Web representation languages and frameworks. RegenBase enables researchers to organize and interrogate experimental data generated by spinal cord injury (SCI) research, with the ultimate goal of translating SCI experimental findings in model organisms into human therapies.
BioPortal is a library of biomedical ontologies and terminologies developed in Web Ontology Language (OWL), Resource Description Framework (RDF)(S), Open Biological and Biomedical Ontologies (OBO) format, and Protégé frames and Rich Release Format. BioPortal groups ontologies by domain to aid discoverability and allows users to browse, search and visualize the content of ontologies. BioPortal also provides ontology recommendation, text annotation, ontology mapping, and a reference index to resources like PubMed.
Ontology and Knowledge Base of Probability Distributions
ProbOnto, is an ontology-based knowledge base of probability distributions, featuring more than 150 uni- and multivariate distributions with their defining functions, characteristics, relationships and re-parameterization formulas. It can be used for model annotation and facilitates the encoding of distribution-based models, related functions and quantities. ProbOnto is both an ontology and a knowledge base, however its primary focus is the knowledge base.
Virtual Fly Brain
VFB is an interactive tool for neurobiologists to explore the detailed neuroanatomy, neuron connectivity and gene expression of Drosophila melanogaster. Our goal is to make it easier for researchers to find relevant anatomical information and reagents. We integrate the neuroanatomical and expression data from the published literature, as well as image datasets onto the same brain template, making it possible to run cross searches, find similar neurons and compare image data on our 3D Viewer.
A resource providing data on bioentities and their associated ontology terms for Plant Biology. The database provides access to ontology-based annotations of genes, phenotypes and germplasms from about 90 plant species. A number of internal and external ontologies are used to annotate the biological data available from this resource.
AgroPortal is an ontology repository for agronomy as well as food, plant, agriculture and biodiversity sciences. It provides ontology hosting, search, versioning, visualization, comment, and recommendation; enables semantic annotation; stores and exploits ontology alignments; and enables interoperation with the semantic web. To align with the needs of the agronomy community, AgroPortal uses SKOS vocabularies and trait dictionaries) and supported features (offering detailed metadata and advanced annotation capabilities).
Data and Service Center for the Humanities
The Data and Service Center for the Humanities (DaSCH) digital repository allows long-term access to qualitative data in the Humanities, and provides data deposition and discovery facilities. DaSCH has been created in accordance with the FAIR principles and various international standards for interoperability. The repository accepts “simple” datasets in form of flat files as well as a project-specific “complex” datasets with data based on project/user-specific data models. Multiple data types are allowed, including qualitative data such as text, images, digital facsimile, sound files, and videos.
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