databases > DOI:10.25504/FAIRsharing.bg5xqs

ready Ensembl Fungi

General Information
From release 28 forward, all fungal genomes whose sequence and annotation has been completed and submitted to the the International Nucleotide Sequence Database Collaboration (i.e. the ENA, GenBank and DDBJ databases) is available in Ensembl Fungi. The release now consists of a total of 589 genomes, of which 536 have been taken from the archives and 53 taken directly from other sources.

Homepage http://fungi.ensembl.org/index.html

Developed in European Union , United Kingdom

Created in 2015

Taxonomic range






How to cite this record FAIRsharing.org: Ensembl Fungi; Ensembl Fungi; DOI: https://doi.org/10.25504/FAIRsharing.bg5xqs; Last edited: Feb. 22, 2018, 3:03 p.m.; Last accessed: Sep 26 2018 9:20 a.m.


Record added: March 18, 2017, 4:10 p.m.
Record updated: Feb. 22, 2018, 3:03 p.m. by The FAIRsharing Team.



Support

General

blog http://www.ensembl.info/
support email helpdesk@ensemblgenomes.org
Mailing List None
online documentation http://ensemblgenomes.org/info
twitter @ensemblgenomes

Additional Information

Contact Paul Julian Kersey
Identifiers.org MIR:00000206


Access / Retrieve Data

Conditions of Use

Applies to: Data use

Data Access

FTP download ftp://ftp.ensembl.org/pub/ensembl-api.tar.gz
Download http://fungi.ensembl.org/info/website/ftp/index.html
Browse http://fungi.ensembl.org/species.html
Search http://fungi.ensembl.org/index.html

REST Web Services

Ensembl Genomes REST API Endpoints http://rest.ensemblgenomes.org/

Other Web Services

Ensembl Perl API https://github.com/Ensembl
Ensembl Genomes Virtual Machine ftp://ftp.ensemblgenomes.org/pub/release-34/virtual_machines


Publications

Ensembl Genomes 2016: more genomes, more complexity.

Kersey PJ,Allen JE,Armean I,Boddu S,Bolt BJ,Carvalho-Silva D,Christensen M,Davis P,Falin LJ,Grabmueller C,Humphrey J,Kerhornou A,Khobova J,Aranganathan NK,Langridge N,Lowy E,McDowall MD,Maheswari U,Nuhn M,Ong CK,Overduin B,Paulini M,Pedro H,Perry E,Spudich G,Tapanari E,Walts B,Williams G,Tello-Ruiz M,Stein J,Wei S,Ware D,Bolser DM,Howe KL,Kulesha E,Lawson D,Maslen G,Staines DM
Nucleic Acids Res 2015

View Paper (PubMed) View Publication

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