standards > terminology artifact > DOI:10.25504/FAIRsharing.bgkyd7


ready Measurement Method Ontology

Abbreviation: MMO


General Information
The Measurement Method Ontology is designed to represent the variety of methods used to make qualitative and quantitative clinical and phenotype measurements both in the clinic and with model organisms.



How to cite this record FAIRsharing.org: MMO; Measurement Method Ontology; DOI: https://doi.org/10.25504/FAIRsharing.bgkyd7; Last edited: Aug. 8, 2019, 10:46 a.m.; Last accessed: Sep 20 2019 8:31 a.m.


Record updated: July 13, 2019, 7:14 p.m. by The FAIRsharing Team.

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Tools

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Schemas

No XSD schemas defined


Access / Retrieve Data

Conditions of Use


Data Access




Publications

Three ontologies to define phenotype measurement data.

Shimoyama M,Nigam R,McIntosh LS,Nagarajan R,Rice T,Rao DC,Dwinell MR
Front Genet 2012

View Paper (PubMed) View Publication

The clinical measurement, measurement method and experimental condition ontologies: expansion, improvements and new applications.

Smith JR,Park CA,Nigam R,Laulederkind SJ,Hayman GT,Wang SJ,Lowry TF,Petri V,Pons JD,Tutaj M,Liu W,Worthey EA,Shimoyama M,Dwinell MR
J Biomed Semantics 2013

View Paper (PubMed) View Publication

MMO Ontology Display

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Disclaimer: This widget assumes the availability of the ontology resources in the NCBO BioPortal.

View in OBO Foundry.



Related Standards

Reporting Guidelines

No guidelines defined

Models and Formats

No syntax standards defined

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined


Implementing Databases (3)
Rat Genome Database
The Rat Genome Database is the premier site for genetic, genomic, phenotype, and disease data generated from rat research. It provides easy access to corresponding human and mouse data for cross-species comparison and its comprehensive data and innovative software tools make it a valuable resource for researchers worldwide.

Animal Quantitative Trait Loci (QTL) Database
The Animal Quantitative Trait Loci (QTL) Database (Animal QTLdb) strives to collect all publicly available trait mapping data, i.e. QTL (phenotype/expression, eQTL), candidate gene and association data (GWAS), and copy number variations (CNV) mapped to livestock animal genomes, in order to facilitate locating and comparing discoveries within and between species. New data and database tools are continually developed to align various trait mapping data to map-based genome features such as annotated genes.

OBO Foundry
The Open Biological and Biomedical Ontology (OBO) Foundry is a collective of ontology developers that are committed to collaboration and adherence to shared principles. The mission of the OBO Foundry is to develop a family of interoperable ontologies that are both logically well-formed and scientifically accurate. To achieve this, OBO Foundry participants voluntarily adhere to and contribute to the development of an evolving set of principles including open use, collaborative development, non-overlapping and strictly-scoped content, and common syntax and relations, based on ontology models that work well, such as the Gene Ontology (GO). The OBO Foundry is overseen by an Operations Committee with Editorial, Technical and Outreach working groups.

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Grant Number(s)

  • HL094271 (National Heart, Lung and Blood Institute (NHLBI), National Institutes of Health (NIH), Bethesda, MD, USA)

  • R01HL064541 (National Institutes of Health (NIH), Bethesda, MD, USA)

  • R01HL094271 (National Institutes of Health (NIH), Bethesda, MD, USA)

  • R01HL094286 (National Institutes of Health (NIH), Bethesda, MD, USA)