Measurement Method Ontology

Abbreviation: MMO

General Information

The Measurement Method Ontology is designed to represent the variety of methods used to make qualitative and quantitative clinical and phenotype measurements both in the clinic and with model organisms.

Homepage http://rgd.mcw.edu/rgdweb/ontology/view.html?acc_id=MMO:0000000

Countries that developed this resource United States

Created in 2011

Taxonomic range

Homo sapiens

Rattus norvegicus

Knowledge Domains

Subjects

How to cite this record FAIRsharing.org: MMO; Measurement Method Ontology; DOI: https://doi.org/10.25504/FAIRsharing.bgkyd7; Last edited: Aug. 8, 2019, 10:46 a.m.; Last accessed: Sep 20 2019 8:31 a.m.

Record updated: July 13, 2019, 7:14 p.m. by The FAIRsharing Team.

Show edit history

Edits to 'https://fairsharing.org/FAIRsharing.bgkyd7' by 'The FAIRsharing Team' at 19:14, 13 Jul 2019 (approved):

	'supportLinks' has been modified:
		Before:
			contact form|http://rgd.mcw.edu/contact/index.shtml
			help|http://rgd.mcw.edu/wg/help3/data/ontologies
			online documentation|http://sourceforge.net/projects/phenoonto/
		After:
			contact form|http://rgd.mcw.edu/contact/index.shtml
			help|http://rgd.mcw.edu/wg/help3/data/ontologies
			online documentation|http://sourceforge.net/projects/phenoonto/
			twitter|@ratgenome
		Added:
			twitter|@ratgenome
		Removed:

Edits to 'https://fairsharing.org/FAIRsharing.bgkyd7' by 'The FAIRsharing Team' at 19:13, 13 Jul 2019 (approved):

	'organizations' has been modified:
		Before:
			U.S. National Library of Medicine|https://www.nlm.nih.gov/|Funds
			Rat Genome Database|http://rgd.mcw.edu/wg/home|Maintains
		After:
			U.S. National Library of Medicine|https://www.nlm.nih.gov/|Funds
			Rat Genome Database|http://rgd.mcw.edu/wg/home|Maintains
			National Institutes of Health (NIH), Bethesda, MD, USA|http://www.nih.gov|Funds
			National Heart, Lung and Blood Institute (NHLBI), National Institutes of Health (NIH), Bethesda, MD, USA|http://www.nhlbi.nih.gov/|Funds
		Added:
			National Institutes of Health (NIH), Bethesda, MD, USA|http://www.nih.gov|Funds
			National Heart, Lung and Blood Institute (NHLBI), National Institutes of Health (NIH), Bethesda, MD, USA|http://www.nhlbi.nih.gov/|Funds
		Removed:

	'contactORCID' has been modified:
		Before: 
		After: 0000-0003-1176-0796

	'dataProcesses' has been modified:
		Before:
			RGD Ontology Search
		After:
			RGD Ontology Browse and Search
		Added:
			RGD Ontology Browse and Search
		Removed:
			RGD Ontology Search

	'grants' has been modified:
		Before:
			R01HL064541
			R01HL094271
			R01HL094286
		After:
			HL094271
			R01HL064541
			R01HL094271
			R01HL094286
		Added:
			HL094271
		Removed:

	'miriam_id' has been modified:
		Before: None
		After: 

	'publications' has been modified:
		Before:
			Three ontologies to define phenotype measurement data.|Shimoyama M,Nigam R,McIntosh LS,Nagarajan R,Rice T,Rao DC,Dwinell MR|Front Genet|2012
		After:
			Three ontologies to define phenotype measurement data.|Shimoyama M,Nigam R,McIntosh LS,Nagarajan R,Rice T,Rao DC,Dwinell MR|Front Genet|2012
			The clinical measurement, measurement method and experimental condition ontologies: expansion, improvements and new applications.|Smith JR,Park CA,Nigam R,Laulederkind SJ,Hayman GT,Wang SJ,Lowry TF,Petri V,Pons JD,Tutaj M,Liu W,Worthey EA,Shimoyama M,Dwinell MR|J Biomed Semantics|2013
		Added:
			The clinical measurement, measurement method and experimental condition ontologies: expansion, improvements and new applications.|Smith JR,Park CA,Nigam R,Laulederkind SJ,Hayman GT,Wang SJ,Lowry TF,Petri V,Pons JD,Tutaj M,Liu W,Worthey EA,Shimoyama M,Dwinell MR|J Biomed Semantics|2013
		Removed:

Edits to 'https://fairsharing.org/FAIRsharing.bgkyd7' by 'The FAIRsharing Team' at 19:14, 11 Sep 2016 (approved):

	'description' has been modified:
		Before: The Measurement Method Ontology is designed to represent the variety of methods used to make qualitative and quantitative clincial and phenotype measurements both in the clinic and with model organisms.
		After: The Measurement Method Ontology is designed to represent the variety of methods used to make qualitative and quantitative clinical and phenotype measurements both in the clinic and with model organisms. Domain list has changed:  Previous values: Biomedical science|| Clinical data|| Life Science|domain| Model organism|| Phenotype|information content entity|http://ontology.neuinfo.org/NIF/DigitalEntities/NIF-Investigation.owl#birnlex_2087 New values:  Biomedical Science|None| Clinical data|| Life Science|domain| Model organism|| Phenotype|information content entity|http://ontology.neuinfo.org/NIF/DigitalEntities/NIF-Investigation.owl#birnlex_2087 Ontology Standardization|None| Support links have changed:  Previous values: http://rgd.mcw.edu/contact/index.shtml http://sourceforge.net/projects/phenoonto/ New values:  http://rgd.mcw.edu/contact/index.shtml http://sourceforge.net/projects/phenoonto/ http://rgd.mcw.edu/wg/help3/data/ontologies

In Collections

OBO Foundry

Support

General

contact form	http://rgd.mcw.edu/contact/index.shtml
help	http://rgd.mcw.edu/wg/help3/data/ontolog ...
online documentation	http://sourceforge.net/projects/phenoont ...
twitter	@ratgenome

Additional Information

Contact

Mary Shimoyama ORCID

External Links

Bioportal	http://bioportal.bioontology.org/ontologies/MMO
OBO	http://obofoundry.org/ontology/mmo.html

Tools

No tools defined

Schemas

No XSD schemas defined

Access / Retrieve Data

Conditions of Use

Data Access

RGD Ontology Browse and Search

http://rgd.mcw.edu/rgdweb/ontology/search.html

Publications

Three ontologies to define phenotype measurement data.

Shimoyama M,Nigam R,McIntosh LS,Nagarajan R,Rice T,Rao DC,Dwinell MR
Front Genet 2012

View Paper (PubMed) View Publication

The clinical measurement, measurement method and experimental condition ontologies: expansion, improvements and new applications.

Smith JR,Park CA,Nigam R,Laulederkind SJ,Hayman GT,Wang SJ,Lowry TF,Petri V,Pons JD,Tutaj M,Liu W,Worthey EA,Shimoyama M,Dwinell MR
J Biomed Semantics 2013

View Paper (PubMed) View Publication

MMO Ontology Display

View in BioPortal.

Disclaimer: This widget assumes the availability of the ontology resources in the NCBO BioPortal.

View in OBO Foundry.

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

Models and Formats

No syntax standards defined

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined

Implementing Databases (3)

Rat Genome Database
The Rat Genome Database is the premier site for genetic, genomic, phenotype, and disease data generated from rat research. It provides easy access to corresponding human and mouse data for cross-species comparison and its comprehensive data and innovative software tools make it a valuable resource for researchers worldwide.

Animal Quantitative Trait Loci (QTL) Database
The Animal Quantitative Trait Loci (QTL) Database (Animal QTLdb) strives to collect all publicly available trait mapping data, i.e. QTL (phenotype/expression, eQTL), candidate gene and association data (GWAS), and copy number variations (CNV) mapped to livestock animal genomes, in order to facilitate locating and comparing discoveries within and between species. New data and database tools are continually developed to align various trait mapping data to map-based genome features such as annotated genes.

OBO Foundry
The Open Biological and Biomedical Ontology (OBO) Foundry is a collective of ontology developers that are committed to collaboration and adherence to shared principles. The mission of the OBO Foundry is to develop a family of interoperable ontologies that are both logically well-formed and scientifically accurate. To achieve this, OBO Foundry participants voluntarily adhere to and contribute to the development of an evolving set of principles including open use, collaborative development, non-overlapping and strictly-scoped content, and common syntax and relations, based on ontology models that work well, such as the Gene Ontology (GO). The OBO Foundry is overseen by an Operations Committee with Editorial, Technical and Outreach working groups.

Implementing Policies

This record is not implemented by any policy.

Credit

Record Maintainer

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Funds

U.S. National Library of Medicine (Government body)
National Institutes of Health (NIH), Bethesda, MD, USA (Government body)
National Heart, Lung and Blood Institute (NHLBI), National Institutes of Health (NIH), Bethesda, MD, USA (Government body)

Maintains

Rat Genome Database (Consortium)

Grant Number(s)

HL094271 (National Heart, Lung and Blood Institute (NHLBI), National Institutes of Health (NIH), Bethesda, MD, USA)
R01HL064541 (National Institutes of Health (NIH), Bethesda, MD, USA)
R01HL094271 (National Institutes of Health (NIH), Bethesda, MD, USA)
R01HL094286 (National Institutes of Health (NIH), Bethesda, MD, USA)

Measurement Method Ontology

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