standards > model/format > DOI:10.25504/FAIRsharing.c12tyk


ready mzTab


General Information
The aim of the format is to present the results of a proteomics experiment in a computationally accessible overview. The aim is not to provide the detailed evidence for these results, or allow recreating the process which led to the results. Both of these functions are established through links to more detailed representations in other formats, in particular mzIdentML and mzQuantML. mzTab is meant to be a light-weight, tab-delimited file format for proteomics data. The target audience for this format are primarily researchers outside of proteomics. It should be easy to parse and only contain the minimal information required to evaluate the results of a proteomics experiment. One of the goals of this file format is that it, for example, should be possible for a biologist to open such a file in Excel and still be able to "see" the data. This format should also become a way to disseminate proteomics results through protocols such as DAS.

Homepage http://www.psidev.info/mztab

Countries that developed this resource Austria , China , Germany , Switzerland , United Kingdom , United States

Created in 2012

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How to cite this record FAIRsharing.org: mzTab; mzTab; DOI: https://doi.org/10.25504/FAIRsharing.c12tyk; Last edited: Jan. 8, 2019, 1:39 p.m.; Last accessed: Aug 19 2019 10:17 a.m.


This record is maintained by HUPO PSI  (HUPOPSI)  and salek  ORCID

Record added: March 1, 2017, 1:14 p.m.
Record updated: Sept. 24, 2018, 12:03 p.m. by The FAIRsharing Team.

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In Collections
HUPO Proteomics Standards Initiative


Support

General

online documentation https://github.com/HUPO-PSI/mzTab/wiki
online documentation https://github.com/HUPO-PSI/mzTab

Additional Information

Contact None


Schemas

No XSD schemas defined


Access / Retrieve Data

Conditions of Use





Publications

The mzTab data exchange format: communicating mass-spectrometry-based proteomics and metabolomics experimental results to a wider audience.

Griss J,Jones AR,Sachsenberg T,Walzer M,Gatto L,Hartler J,Thallinger GG,Salek RM,Steinbeck C,Neuhauser N,Cox J,Neumann S,Fan J,Reisinger F,Xu QW,Del Toro N,Perez-Riverol Y,Ghali F,Bandeira N,Xenarios I,Kohlbacher O,Vizcaino JA,Hermjakob H
Mol Cell Proteomics 2014

View Paper (PubMed) View Publication

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

No semantic standards defined

Models and Formats

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined


Implementing Databases (2)
Japan Proteome Standard Repository
jPOSTrepo (Japan ProteOme STandard Repository) is a data repository of sharing MS raw/processed data.
Mass Spectrometry Virtual Interactive Environment
MassIVE is a community resource developed by the NIH-funded Center for Computational Mass Spectrometry to promote the global, free exchange of mass spectrometry data. MassIVE datasets can be assigned ProteomeXchange accessions to satisfy publication requirements.

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This record is not implemented by any policy.


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