standards > model/format > DOI:10.25504/FAIRsharing.c9fakh


ready Big Pattern Space Layout

Abbreviation: bigPsl


General Information
The bigPsl format stores alignments between two sequences just as PSL files do; however, bigPsl files are compressed and indexed as bigBeds. PSL files are converted to bigPsl files using the program bedToBigBed, run with the -as option to pull in a special autoSql (.as) file that defines the fields of the bigPsl.

Homepage http://genome.ucsc.edu/goldenPath/help/bigPsl.html

Developed in United States

Taxonomic range

Knowledge Domains 

Subjects 




How to cite this record FAIRsharing.org: bigPsl; Big Pattern Space Layout; DOI: https://doi.org/10.25504/FAIRsharing.c9fakh; Last edited: Jan. 8, 2019, 1:33 p.m.; Last accessed: Apr 19 2019 1:30 p.m.


This record is maintained by BrianLee  ORCID

Record added: March 28, 2017, 6:40 p.m.
Record updated: March 29, 2017, 8:53 a.m. by The FAIRsharing Team.

Show edit history



Support

No support information provided.

Additional Information

Contact UCSC Staff


Schemas

No XSD schemas defined


Access / Retrieve Data

Conditions of Use





Publications

No publications available


Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

No semantic standards defined

Models and Formats

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined


Implementing Databases (1)
UCSC Genome Browser database
Genome assemblies and aligned annotations for a wide range of vertebrates and model organisms, along with an integrated tool set for visualizing, comparing, analyzing and sharing both publicly available and user-generated genomic datasets.

Implementing Policies

This record is not implemented by any policy.


Credit

Record Maintainer

Maintains