standards > model/format > DOI:10.25504/FAIRsharing.c9fakh


ready Big Pattern Space Layout

Abbreviation: bigPsl


General Information
The bigPsl format stores alignments between two sequences just as PSL files do; however, bigPsl files are compressed and indexed as bigBeds. PSL files are converted to bigPsl files using the program bedToBigBed, run with the -as option to pull in a special autoSql (.as) file that defines the fields of the bigPsl.

Homepage http://genome.ucsc.edu/goldenPath/help/bigPsl.html

Developed in United States

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How to cite this record FAIRsharing.org: bigPsl; Big Pattern Space Layout; DOI: https://doi.org/10.25504/FAIRsharing.c9fakh; Last edited: Jan. 8, 2019, 1:33 p.m.; Last accessed: Jan 23 2019 12:56 a.m.


This record is maintained by BrianLee  ORCID

Record added: March 28, 2017, 6:40 p.m.
Record updated: March 29, 2017, 8:53 a.m. by The FAIRsharing Team.

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Implementing Databases (1)
UCSC Genome Browser database
Genome assemblies and aligned annotations for a wide range of vertebrates and model organisms, along with an integrated tool set for visualizing, comparing, analyzing and sharing both publicly available and user-generated genomic datasets.

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