Observ-Tab

General Information

This record was deprecated on Sept. 24, 2019 for the following reason(s): This resource has been deprecated, though remains available for reference purposes.

Observ-Tab is the tabular exchange format for Observ-OM. Observ-OM is a model to capture 'any' phenotype observation lead by EU-GEN2PHEN. Its purpose is to store individual and summary level observations in a uniform way to enable harmonization and interoperability of phenotypic and genotypic data across human genetics, model organisms and biobanks.

Homepage http://wiki.gcc.rug.nl/wiki/ObservStart

Countries that developed this resource Finland , Netherlands , United Kingdom

Created in 2011

Taxonomic range

All

Homo sapiens

Knowledge Domains

Subjects

How to cite this record FAIRsharing.org: Observ-Tab; Observ-Tab; DOI: https://doi.org/10.25504/FAIRsharing.cfhbvn; Last edited: Sept. 24, 2019, 11:13 a.m.; Last accessed: Feb 18 2020 4:05 p.m.

Publication for citation Observ-OM and Observ-TAB: Universal syntax solutions for the integration, search, and exchange of phenotype and genotype information. Adamusiak T,Parkinson H,Muilu J,Roos E,van der Velde KJ,Thorisson GA,Byrne M,Pang C,Gollapudi S,Ferretti V,Hillege H,Brookes AJ,Swertz MA; Hum Mutat ; 2012; 10.1002/humu.22070;

This record is maintained by mswertz

Record updated: Sept. 24, 2019, 11:13 a.m. by The FAIRsharing Team.

Show edit history

Edits to 'https://fairsharing.org/FAIRsharing.cfhbvn' by 'The FAIRsharing Team' at 11:13, 24 Sep 2019 (not approved):

	'status' has been modified:
		Before: RDY
		After: DEP

	'contact' has been modified:
		Before: 
		After: None

	'miriam_id' has been modified:
		Before: 
		After: None

	'description' has been modified:
		Before: Observ-Tab is the tabular exchange format for Observ-OM. Observ-OM is a model to capture 'any' phenotype observation lead by ?EU-GEN2PHEN. Its purpose is to store individual and summary level observations in a uniform way to enable harmonization and interoperability of phenotypic and genotypic data across human genetics, model organisms and biobanks. 
		After: Observ-Tab is the tabular exchange format for Observ-OM. Observ-OM is a model to capture 'any' phenotype observation lead by ?EU-GEN2PHEN. Its purpose is to store individual and summary level observations in a uniform way to enable harmonization and interoperability of phenotypic and genotypic data across human genetics, model organisms and biobanks.

Edits to 'https://fairsharing.org/FAIRsharing.cfhbvn' by 'The FAIRsharing Team' at 10:40, 23 Sep 2019 (approved):

	'onto_disciplines' has been modified:
		Before:
			Biomedical Science
			Life Sciences
		After:
			Biomedical Science
			Genetics
			Life Sciences
		Added:
			Genetics
		Removed:

	'supportLinks' has been modified:
		Before:
			help|http://www.molgenis.org/wiki/TracGuide
			mailing list|https://trac.edgewall.org/wiki/MailingList
			online documentation|http://www.molgenis.org/wiki/Documentation
		After:
		Added:
		Removed:
			help|http://www.molgenis.org/wiki/TracGuide
			mailing list|https://trac.edgewall.org/wiki/MailingList
			online documentation|http://www.molgenis.org/wiki/Documentation

	'description' has been modified:
		Before: Observ-Tab is the tabular exchange format for Observ-OM. Observ-OM is a model to capture 'any' phenotype observation lead by ?EU-GEN2PHEN. Our mission mission: store individual and summary level observations in a uniform way to enable harmonization and interoperability of phenotypic and genotypic data across human genetics, model organisms and biobanks. Next to the object model we have an tabular exchange format Observ-TAB and user interfaces, search wizard, ?ontology links and Excel import/export.
		After: Observ-Tab is the tabular exchange format for Observ-OM. Observ-OM is a model to capture 'any' phenotype observation lead by ?EU-GEN2PHEN. Its purpose is to store individual and summary level observations in a uniform way to enable harmonization and interoperability of phenotypic and genotypic data across human genetics, model organisms and biobanks. 

	'onto_domains' has been modified:
		Before:
			phenotype
		After:
			Biobank
			Model organisms
			genotype
			phenotype
		Added:
			Biobank
			Model organisms
			genotype
		Removed:

Edits to 'https://fairsharing.org/FAIRsharing.cfhbvn' by 'The FAIRsharing Team' at 10:33, 23 Sep 2019 (approved):

	'miriam_id' has been modified:
		Before: None
		After: 

	'homepage' has been modified:
		Before: http://www.molgenis.org/wiki/ObservStart
		After: http://wiki.gcc.rug.nl/wiki/ObservStart

Support

No support information provided.

Tools

No tools defined

Schemas

No XSD schemas defined

Access / Retrieve Data

Conditions of Use

Publications

Observ-OM and Observ-TAB: Universal syntax solutions for the integration, search, and exchange of phenotype and genotype information.

Adamusiak T,Parkinson H,Muilu J,Roos E,van der Velde KJ,Thorisson GA,Byrne M,Pang C,Gollapudi S,Ferretti V,Hillege H,Brookes AJ,Swertz MA
Hum Mutat 2012

View Paper (PubMed) View Publication

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

No semantic standards defined

Models and Formats

No syntax standards defined

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined

Implementing Databases (0)

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Implementing Policies

This record is not implemented by any policy.

Credit

Record Maintainer

This record is maintained by mswertz

Funds

Biobanking and Biomolecular Resources Research Infrastructure, The Netherlands (Consortium)
European Commission FP7 (Government body)

Maintains

University of Groningen, Netherlands (University) Lead

Grant Number(s)

BBMRI-NL RP-2 (Biobanking and Biomolecular Resources Research Infrastructure, The Netherlands)

Observ-Tab

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