standards > model/format > DOI:10.25504/FAIRsharing.chmyvk


ready BLAST-like Alignment Tool Format

Abbreviation: BLAT Format


General Information
BLAT is a multiple algorithms developed for the analysis and comparison of biological sequences such as DNA, RNA and proteins.

Homepage http://genome.ucsc.edu/goldenPath/help/hgTracksHelp.html#BLATAlign

Developed in United States

Created in 2001




How to cite this record FAIRsharing.org: BLAT Format; BLAST-like Alignment Tool Format; DOI: https://doi.org/10.25504/FAIRsharing.chmyvk; Last edited: Jan. 8, 2019, 1:28 p.m.; Last accessed: Jan 23 2019 6:16 p.m.


Record updated: Oct. 22, 2016, 7:07 p.m. by The FAIRsharing Team.

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Applies to: Data use




Publications

BLAT--the BLAST-like alignment tool.

Kent WJ
Genome Res 2002

View Paper (PubMed) View Publication

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Implementing Databases (2)
UCSC Genome Browser database
Genome assemblies and aligned annotations for a wide range of vertebrates and model organisms, along with an integrated tool set for visualizing, comparing, analyzing and sharing both publicly available and user-generated genomic datasets.
The UCSC Archaeal Genome Browser
The UCSC Archaeal Genome Browser is a window on the biology of more than 100 microbial species from the domain Archaea. Basic gene annotation is derived from NCBI Genbank/RefSeq entries, with overlays of sequence conservation across multiple species, nucleotide and protein motifs, non-coding RNA predictions, operon predictions, and other types of bioinformatic analyses. In addition, we display available gene expression data (microarray or high-throughput RNA sequencing). Direct contributions or notices of publication of functional genomic data or bioinformatic analyses from archaeal research labs are very welcome.

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