Minimotif Miner: a tool for investigating protein function.

Balla S., Thapar V., Verma S., Luong T., Faghri T., Huang CH., Rajasekaran S., del Campo JJ., Shinn JH., Mohler WA., Maciejewski MW., Gryk MR., Piccirillo B., Schiller SR., Schiller MR.,
Nat. Methods 2006

Minimotif miner: a computational tool to investigate protein function, disease, and genetic diversity.

Schiller MR.,
Curr Protoc Protein Sci 2007

Viral infection and human disease--insights from minimotifs.

Kadaveru K., Vyas J., Schiller MR.,
Front. Biosci. 2008

Minimotif miner 2nd release: a database and web system for motif search.

Rajasekaran S., Balla S., Gradie P., Gryk MR., Kadaveru K., Kundeti V., Maciejewski MW., Mi T., Rubino N., Vyas J., Schiller MR.,
Nucleic Acids Res. 2009

A proposed syntax for Minimotif Semantics, version 1.

Vyas J., Nowling RJ., Maciejewski MW., Rajasekaran S., Gryk MR., Schiller MR.,
BMC Genomics 2009

Minimotif Miner 3.0: database expansion and significantly improved reduction of false-positive predictions from consensus sequences

Mi T, Merlin JC, Deverasetty S, Gryk MR, Bill TJ, Brooks AW, Lee LY, Rathnayake V, Ross CA, Sargeant DP, Strong CL, Watts P, Rajasekaran S, Schiller MR.
Nucleic Acids Research 2012

Partitioning of minimotifs based on function with improved prediction accuracy.

Rajasekaran S., Mi T., Merlin JC., Oommen A., Gradie P., Schiller MR.,
PLoS ONE 2010

A computational tool for identifying minimotifs in protein-protein interactions and improving the accuracy of minimotif predictions.

Rajasekaran S., Merlin JC., Kundeti V., Mi T., Oommen A., Vyas J., Alaniz I., Chung K., Chowdhury F., Deverasatty S., Irvey TM., Lacambacal D., Lara D., Panchangam S., Rathnayake V., Watts P., Schiller MR.,
Proteins 2011

High-performance exact algorithms for motif search.

Rajasekaran S., Balla S., Huang CH., Thapar V., Gryk M., Maciejewski M., Schiller M.,
J Clin Monit Comput 2005