databases > DOI:10.25504/FAIRsharing.ct66a3

ready PROCOGNATE

General Information
PROCOGNATE is a database of cognate ligands for the domains of enzyme structures in CATH, SCOP and Pfam. The database contains an assignment of PDB ligands to the domains of structures as classified by the CATH, SCOP and Pfam databases. Cognate ligands have been identified using data from the ENZYME and KEGG databases and compared to the PDB ligand using graph matching to assess chemical similarity. Cognate ligands from the known reactions in ENZYME and KEGG for a particular enzyme are then assigned to enzymes structures which have EC numbers.

Homepage http://www.ebi.ac.uk/thornton-srv/databases/procognate/index.html

Developed in European Union

Created in 2006

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How to cite this record FAIRsharing.org: PROCOGNATE; PROCOGNATE; DOI: https://doi.org/10.25504/FAIRsharing.ct66a3; Last edited: Feb. 22, 2018, 2:49 p.m.; Last accessed: Nov 19 2018 9:37 p.m.


Record updated: Sept. 29, 2016, 9:55 a.m. by The FAIRsharing Team.

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help http://www.ebi.ac.uk/thornton-srv/databa ...

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Contact Matthew Bashton

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PROCOGNATE: a cognate ligand domain mapping for enzymes.

Bashton M,Nobeli I,Thornton JM
Nucleic Acids Res 2007

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Cognate ligand domain mapping for enzymes.

Bashton M,Nobeli I,Thornton JM
J Mol Biol 2006

View Paper (PubMed) View Publication

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