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Antimicrobial Peptide Database

Abbreviation:APD

General Information

The data stored in the APD are gleaned from the Protein Data Bank (PDB), Swiss-Prot Protein Knowledgebase and PubMed National Library of Medicine. The antimicrobial peptides in this database contain less than 100 amino acid residues, are in the mature and active form, and primarily from natural sources, ranging from bacteria, fungi, plants, to animals.

Homepage http://aps.unmc.edu/AP/main.php

Countries that developed this resource United States

Created in 2003

Taxonomic range

All

Knowledge Domains

Subjects

How to cite this record FAIRsharing.org: APD; Antimicrobial Peptide Database; DOI: https://doi.org/10.25504/FAIRsharing.ctwd7b; Last edited: Jan. 8, 2019, 1:20 p.m.; Last accessed: Jul 06 2020 7:03 a.m.

Record updated: Jan. 4, 2017, 3:55 p.m. by The FAIRsharing Team.

Show edit history

Edits to 'https://fairsharing.org/FAIRsharing.ctwd7b' by 'The FAIRsharing Team' at 15:55, 04 Jan 2017 (approved):

	'description' has been modified:
		Before: The data stored in the APD were gleaned from the Protein Data Bank (PDB), Swiss-Prot Protein Knowledgebase and PubMed National Library of Medicine. The antimicrobial peptides in this database contain less than 100 amino acid residues, are in the mature and active form, and primarily from natural sources, ranging from bacteria, fungi, plants, to animals.
		After: The data stored in the APD are gleaned from the Protein Data Bank (PDB), Swiss-Prot Protein Knowledgebase and PubMed National Library of Medicine. The antimicrobial peptides in this database contain less than 100 amino acid residues, are in the mature and active form, and primarily from natural sources, ranging from bacteria, fungi, plants, to animals.

Edits to 'https://fairsharing.org/FAIRsharing.ctwd7b' by 'The FAIRsharing Team' at 03:01, 13 Dec 2016 (approved):

	'contactName' has been modified:
		Before:
			
		After:
			Guangshun Wang
		Added:
		Removed:

Support

General

FAQ	http://aps.unmc.edu/AP/FAQ.php
online documentation	http://aps.unmc.edu/AP/about.php

Additional Information

Contact

Guangshun Wang

Tools

analyze

http://aps.unmc.edu/AP/prediction/prediction_main.php

Access / Retrieve Data

Conditions of Use

Applies to: Data use

Attribution required
Publicly available data

Data Access

search	http://aps.unmc.edu/AP/database/query_input.php
browse	http://aps.unmc.edu/AP/main.php

Publications

APD: the Antimicrobial Peptide Database.

Wang Z., Wang G.,
Nucleic Acids Res. 2004

View Paper (PubMed) View Publication

APD3: the antimicrobial peptide database as a tool for research and education.

Wang G,Li X,Wang Z
Nucleic Acids Res 2015

View Paper (PubMed) View Publication

APD2: the updated antimicrobial peptide database and its application in peptide design.

Wang G,Li X,Wang Z
Nucleic Acids Res 2008

View Paper (PubMed) View Publication

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

No semantic standards defined

Models and Formats

No syntax standards defined

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined

Related Databases

Implementing Policies

This record is not implemented by any policy.

Credit

Record Maintainer

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Funds

U.S. National Library of Medicine (Government body)

Maintains

University of Nebraska Medical Center (University)

Grant Number(s)

R01AI105147 (U.S. National Library of Medicine)

Antimicrobial Peptide Database

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