IntAct molecular interaction database
Abbreviation:IntAct
Homepage http://www.ebi.ac.uk/intact
Developed in European Union
Created in 2003
Taxonomic range
Scope and data types
In the following recommendations:
How to cite this record FAIRsharing.org: IntAct; IntAct molecular interaction database; DOI: https://doi.org/10.25504/FAIRsharing.d05nwx; Last edited: Feb. 22, 2018, 2:43 p.m.; Last accessed: Nov 21 2018 3:49 a.m.
Record updated: Jan. 12, 2018, 2:21 p.m. by The FAIRsharing Team.
| FAQ | http://www.ebi.ac.uk/intact/pages/faq/fa ... |
| contact form | http://www.ebi.ac.uk/support/index.php?q ... |
| @intact_project |
Additional Information
| Contact | Sandra Orchard ORCID |
| Identifiers.org | MIR:00000010 |
TeSS training resources
Intact molecular interactions at embl ebi
Intact the molecular interactions database at embl ebi webinar
Conditions of Use
Applies to: Data useData Versioning
| Versioning by date | No link recorded |
| Access to historical files available | No link recorded |
Data Release
| Monthly release | http://www.ebi.ac.uk/intact |
Data Curation
| Manual curation | http://www.ebi.ac.uk/intact/submission?conversationContext=1 |
Data Access
| Download | ftp://ftp.ebi.ac.uk/pub/databases/intact/current |
| Search | http://www.ebi.ac.uk/intact/search |
| Browse | http://www.ebi.ac.uk/ontology-lookup/?termId=MI:0469 |
| web interface representation of PSI-MI XML 2.5 | http://www.ebi.ac.uk/intact |
| web service (PSICQUIC) | ftp://ftp.ebi.ac.uk/pub/databases/intact/ |
| RDF export | No link recorded |
REST Web Services
| RESTful services | http://www.ebi.ac.uk/Tools/webservices/psicquic/intact/webservices |
SOAP Web Services
| SOAP services | http://www.ebi.ac.uk/Tools/webservices/psicquic/intact/webservices |
The IntAct molecular interaction database in 2010.
Aranda B., Achuthan P., Alam-Faruque Y., Armean I., Bridge A., Derow C., Feuermann M., Ghanbarian AT., Kerrien S., Khadake J., Kerssemakers J., Leroy C., Menden M., Michaut M., Montecchi-Palazzi L., Neuhauser SN., Orchard S., Perreau V., Roechert B., van Eijk K., Hermjakob H.,
Nucleic Acids Res. 2010
Broadening the horizon--level 2.5 of the HUPO-PSI format for molecular interactions.
Kerrien S., Orchard S., Montecchi-Palazzi L., Aranda B., Quinn AF., Vinod N., Bader GD., Xenarios I., Wojcik J., Sherman D., Tyers M., Salama JJ., Moore S., Ceol A., Chatr-Aryamontri A., Oesterheld M., Stümpflen V., Salwinski L., Nerothin J., Cerami E., Cusick ME., Vidal M., Gilson M., Armstrong J., Woollard P., Hogue C., Eisenberg D., Cesareni G., Apweiler R., Hermjakob H.,
BMC Biol. 2007
PSICQUIC and PSISCORE: accessing and scoring molecular interactions.
Aranda B., Blankenburg H., Kerrien S., Brinkman FS., Ceol A., Chautard E., Dana JM., De Las Rivas J., Dumousseau M., Galeota E., Gaulton A., Goll J., Hancock RE., Isserlin R., Jimenez RC., Kerssemakers J., Khadake J., Lynn DJ., Michaut M., O'Kelly G., Ono K., Orchard S., Prieto C., Razick S., Rigina O., Salwinski L., Simonovic M., Velankar S., Winter A., Wu G., Bader GD., Cesareni G., Donaldson IM., Eisenberg D., Kleywegt GJ., Overington J., Ricard-Blum S., Tyers M., Albrecht M., Hermjakob H.,
Nat. Methods 2011
IntAct: an open source molecular interaction database.
Hermjakob H., Montecchi-Palazzi L., Lewington C., Mudali S., Kerrien S., Orchard S., Vingron M., Roechert B., Roepstorff P., Valencia A., Margalit H., Armstrong J., Bairoch A., Cesareni G., Sherman D., Apweiler R.,
Nucleic Acids Res. 2004
Reporting Guidelines
Terminology Artifacts
- Molecular INTeraction database
- Gene3D
- neXtProt
- Agile Protein Interactomes Dataserver
- Reactome - a curated knowledgebase of biological pathways
- VirHostNet 2.0
- Pathway Commons
- Interaction Reference Index Web Interface
- Host Pathogen Interaction Database
- mentha
- Human Protein-Protein Interaction rEference
- PDZscape
- Complex Portal
- RatMine
- YeastMine
- BovineMine
- Scientific Data Data Policy
- Springer Nature - Research Data Policies
- Springer Nature Research Data Policy Type 4
- Cold Spring Harbor Lab Press - Genome Research
- GigaScience - Minimum Standards of Reporting Checklist
- Public Library of Science Recommended Data Repositories
- European Molecular Biology Organisation Press Recommended Databases and Data Standards
- Springer Nature Research Data Policy Type 2 (for life sciences)
- BioMed Central - Minimum Standards of Reporting Checklist
- Cell Press - Trends In Biochemical Sciences - Instructions for Authors
- Cold Spring Harbor Laboratory Press - Genes and Development - Instructions Regarding Data Submission
- Springer Nature Research Data Policy Type 1
- Springer Nature Research Data Policy Type 2
- Springer Nature Research Data Policy Type 3
- Springer Nature Research Data Policy Type 3 (for life sciences)
Record Maintainer
This record is maintained by orchard
Funds
National Center for Research Resources, National Institute of Health (Government body)
US National Institute of General Medical Sciences, (NIGMS) (Government body)
Maintains
Swiss Institute of Bioinformatics (SIB), Switzerland (Research institute)
