IntAct molecular interaction database
Abbreviation:IntAct
Homepage http://www.ebi.ac.uk/intact
Countries that developed this resource European Union
Created in 2003
Taxonomic range
Knowledge Domains
Subjects
How to cite this record FAIRsharing.org: IntAct; IntAct molecular interaction database; DOI: https://doi.org/10.25504/FAIRsharing.d05nwx; Last edited: Jan. 9, 2019, 12:18 p.m.; Last accessed: Nov 22 2019 2:21 a.m.
Record updated: Jan. 9, 2019, 12:17 p.m. by The FAIRsharing Team.
| FAQ | http://www.ebi.ac.uk/intact/pages/faq/fa ... |
| contact form | IntAct Contact Form |
| @intact_project |
Additional Information
| Contact | Sandra Orchard ORCID |
TeSS training resources
Intact molecular interactions at embl ebi
Intact the molecular interactions database at embl ebi webinar
Conditions of Use
Applies to: Data useData Versioning
| Versioning by date | No link recorded |
| Access to historical files available | No link recorded |
Data Release
| Monthly release | http://www.ebi.ac.uk/intact |
Data Curation
| Manual curation | http://www.ebi.ac.uk/intact/submission?conversationContext=1 |
Data Access
| Download | ftp://ftp.ebi.ac.uk/pub/databases/intact/current |
| Search | http://www.ebi.ac.uk/intact/search |
| Browse | http://www.ebi.ac.uk/ontology-lookup/?termId=MI:0469 |
| web interface representation of PSI-MI XML 2.5 | http://www.ebi.ac.uk/intact |
| web service (PSICQUIC) | ftp://ftp.ebi.ac.uk/pub/databases/intact/ |
| RDF export | No link recorded |
REST Web Services
| RESTful services | http://www.ebi.ac.uk/Tools/webservices/psicquic/intact/webservices |
SOAP Web Services
| SOAP services | http://www.ebi.ac.uk/Tools/webservices/psicquic/intact/webservices |
The IntAct molecular interaction database in 2010.
Aranda B., Achuthan P., Alam-Faruque Y., Armean I., Bridge A., Derow C., Feuermann M., Ghanbarian AT., Kerrien S., Khadake J., Kerssemakers J., Leroy C., Menden M., Michaut M., Montecchi-Palazzi L., Neuhauser SN., Orchard S., Perreau V., Roechert B., van Eijk K., Hermjakob H.,
Nucleic Acids Res. 2010
Broadening the horizon--level 2.5 of the HUPO-PSI format for molecular interactions.
Kerrien S., Orchard S., Montecchi-Palazzi L., Aranda B., Quinn AF., Vinod N., Bader GD., Xenarios I., Wojcik J., Sherman D., Tyers M., Salama JJ., Moore S., Ceol A., Chatr-Aryamontri A., Oesterheld M., Stümpflen V., Salwinski L., Nerothin J., Cerami E., Cusick ME., Vidal M., Gilson M., Armstrong J., Woollard P., Hogue C., Eisenberg D., Cesareni G., Apweiler R., Hermjakob H.,
BMC Biol. 2007
PSICQUIC and PSISCORE: accessing and scoring molecular interactions.
Aranda B., Blankenburg H., Kerrien S., Brinkman FS., Ceol A., Chautard E., Dana JM., De Las Rivas J., Dumousseau M., Galeota E., Gaulton A., Goll J., Hancock RE., Isserlin R., Jimenez RC., Kerssemakers J., Khadake J., Lynn DJ., Michaut M., O'Kelly G., Ono K., Orchard S., Prieto C., Razick S., Rigina O., Salwinski L., Simonovic M., Velankar S., Winter A., Wu G., Bader GD., Cesareni G., Donaldson IM., Eisenberg D., Kleywegt GJ., Overington J., Ricard-Blum S., Tyers M., Albrecht M., Hermjakob H.,
Nat. Methods 2011
IntAct: an open source molecular interaction database.
Hermjakob H., Montecchi-Palazzi L., Lewington C., Mudali S., Kerrien S., Orchard S., Vingron M., Roechert B., Roepstorff P., Valencia A., Margalit H., Armstrong J., Bairoch A., Cesareni G., Sherman D., Apweiler R.,
Nucleic Acids Res. 2004
Reporting Guidelines
Terminology Artifacts
Models and Formats
Identifier Schemas
No identifier schema standards defined
Metrics
No metrics standards defined
- Molecular INTeraction database
- Gene3D
- neXtProt
- Agile Protein Interactomes Dataserver
- Reactome - a curated knowledgebase of biological pathways
- STRING
- VirHostNet 2.0
- Pathway Commons
- Interaction Reference Index Web Interface
- FlyMine
- MouseMine @ MGI
- Host Pathogen Interaction Database
- mentha
- Human Protein-Protein Interaction rEference
- PDZscape
- Complex Portal
- HymenopteraMine
- RatMine
- YeastMine
- BovineMine
- ThaleMine
- Genome-wide Integrated Analysis of gene Networks in Tissues 2.0
- Springer Nature Research Data Policy Type 1
- Cold Spring Harbor Laboratory Press - Genes and Development - Instructions Regarding Data Submission
- European Molecular Biology Organisation Press Recommended Databases and Data Standards
- GigaScience - Minimum Standards of Reporting Checklist
- Springer Nature - Research Data Policies
- eLife Recommended Repositories and Standards
- Scientific Data Data Policy
- Cell Press - Trends In Biochemical Sciences - Instructions for Authors
- Springer Nature Research Data Policy Type 2 (for life sciences)
- Springer Nature Research Data Policy Type 4
- Springer Nature Research Data Policy Type 3 (for life sciences)
- Cold Spring Harbor Lab Press - Genome Research
- Springer Nature Research Data Policy Type 2
- Springer Nature Research Data Policy Type 3
- PLOS Recommended Data Repositories
- Cell Press - Current Biology - Information for Authors
- BioMed Central - Minimum Standards of Reporting Checklist
Record Maintainer
This record is maintained by orchard
Funds
National Center for Research Resources, National Institutes of Health, Bethesda, MD, USA (Government body)
National Institute of General Medical Sciences (NIGMS), Bethesda, MD, USA (Government body)
Biotechnology and Biological Sciences Research Council (BBSRC), UK (Government body)
Maintains
Swiss Institute of Bioinformatics (SIB), Switzerland (Research institute)
European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridgeshire, UK (Research institute) Lead
Grant Number(s)
BBSRC MIDAS grant (BB/L024179/1) (Biotechnology and Biological Sciences Research Council (BBSRC), UK)
