FAIRsharing is now available for record creation, update, and search at https://beta.fairsharing.org, please visit us there! Replacement of this read-only version of the legacy site with the new version of FAIRsharing is planned for the week commencing 31 January 2022.

ProtClustDB

General Information

ProtClustDB is a collection of related protein sequences (clusters) consisting of Reference Sequence proteins encoded by complete genomes. This database contains both curated and non-curated clusters.

Homepage http://www.ncbi.nlm.nih.gov/proteinclusters

Countries that developed this resource United States

Created in 2007

Taxonomic range

All

Knowledge Domains

Subjects

How to cite this record FAIRsharing.org: ProtClustDB; ProtClustDB; DOI: https://doi.org/10.25504/FAIRsharing.da493y; Last edited: June 15, 2021, 1:42 p.m.; Last accessed: Jan 29 2022 2:15 p.m.

Record updated: April 20, 2021, 1:27 p.m. by The FAIRsharing Team.

Show edit history

Edits to 'https://fairsharing.org/FAIRsharing.da493y' by 'The FAIRsharing Team' at 13:27, 20 Apr 2021 (approved):

	'licences' has been modified:
		Before:
			Attribution required||Data
			Open Data Commons (ODC) Public Domain Dedication and Licence (PDDL) 1.0|http://opendatacommons.org/licenses/pddl/1.0/|Data
		After:
			NCBI Data Policies and Disclaimer|http://www.ncbi.nlm.nih.gov/home/about/policies.shtml|Data
			Open Data Commons (ODC) Public Domain Dedication and Licence (PDDL) 1.0|http://opendatacommons.org/licenses/pddl/1.0/|Data
		Added:
			NCBI Data Policies and Disclaimer|http://www.ncbi.nlm.nih.gov/home/about/policies.shtml|Data
		Removed:
			Attribution required||Data

	'onto_domains' has been modified:
		Before:
			polypeptide_region
			protein
			structure
		After:
			Structure
			polypeptide_region
			protein
			structure
		Added:
			Structure
		Removed:

Edits to 'https://fairsharing.org/FAIRsharing.da493y' by 'The FAIRsharing Team' at 11:57, 04 Oct 2016 (approved):

	'contactName' has been modified:
		Before:
			
		After:
			General Contact
		Added:
		Removed:

In Collections

RDA Covid-19 WG Resources

Support

General

FAQ	https://www.ncbi.nlm.nih.gov/proteinclus ...
help	http://www.ncbi.nlm.nih.gov/books/NBK379 ...

Additional Information

Contact

General Contact

Tools

BLAST

http://www.ncbi.nlm.nih.gov/genomes/prokhits.cgi

Access / Retrieve Data

Conditions of Use

Applies to: Data use

Data Access

Download

ftp://ftp.ncbi.nih.gov/genomes/CLUSTERS/

Publications

The National Center for Biotechnology Information's Protein Clusters Database.

Klimke W., Agarwala R., Badretdin A., Chetvernin S., Ciufo S., Fedorov B., Kiryutin B., O'Neill K., Resch W., Resenchuk S., Schafer S., Tolstoy I., Tatusova T.,
Nucleic Acids Res. 2009

View Paper (PubMed)

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

No semantic standards defined

Models and Formats

FASTA Sequence Format

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined

Related Databases

No related databases defined

Implementing Policies

This record is not implemented by any policy.

Credit

Record Maintainer

This record is in need of a maintainer. If you login, you'll be able to claim this record.

Funds

National Institutes of Health (NIH), Bethesda, MD, USA (Government body)

Maintains

National Center for Biotechnology Information (NCBI), Rockville, MD, USA (Government body)

ProtClustDB

We need your help!

Developed by

Contact Us

About FAIRsharing