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Synthetic Biology Open Language Visual

Abbreviation: SBOL Visual

General Information

Synthetic Biology Open Language Visual (SBOL Visual) is an open-source graphical notation that uses schematic “glyphs” to specify genetic parts, devices, modules, and systems.

Homepage https://sbolstandard.org/visual-about/

Countries that developed this resource Australia , Canada , China , Denmark , Egypt , Finland , France , India , Japan , Latvia , Netherlands , Norway , Saudi Arabia , Singapore , Spain , United Kingdom , United States

Created in 2015

Taxonomic range

All

Knowledge Domains

Subjects

How to cite this record FAIRsharing.org: SBOL Visual; Synthetic Biology Open Language Visual; DOI: https://doi.org/10.25504/FAIRsharing.dg76vs; Last edited: June 23, 2021, 1:09 p.m.; Last accessed: Oct 25 2021 12:10 a.m.

This record is maintained by sboleditors

Record added: Oct. 5, 2016, 11 a.m.
Record updated: June 23, 2021, 11:50 a.m. by The FAIRsharing Team.

Show edit history

Edits to 'https://fairsharing.org/FAIRsharing.dg76vs' by 'The FAIRsharing Team' at 11:50, 23 Jun 2021 (approved):

	'supportLinks' has been modified:
		Before:
			blog|https://www.facebook.com/SBOLstandards/
			help|https://github.com/SynBioDex/SBOL-visual/issues
			online documentation|https://sbolstandard.org/data-model-specification/
			online documentation|http://sbolstandard.org/sbol-glyph-thumbnails/
			online documentation|https://www.youtube.com/channel/UCrxKZNvDVabwGoxEOMZt_Qg
			twitter|@SBOLstandard
		After:
			forum|https://github.com/SynBioDex/SBOL-visual/issues
			help|https://sbolstandard.org/visual-spec-examples/
			help|https://sbolstandard.org/visual-examples/
			online documentation|https://sbolstandard.org/visual-glyphs/
			online documentation|https://sbolstandard.org/sbol-visual-ontology/
			online documentation|https://github.com/SynBioDex/SBOL-visual
			twitter|@SBOLstandard
		Added:
			forum|https://github.com/SynBioDex/SBOL-visual/issues
			help|https://sbolstandard.org/visual-spec-examples/
			help|https://sbolstandard.org/visual-examples/
			online documentation|https://sbolstandard.org/visual-glyphs/
			online documentation|https://sbolstandard.org/sbol-visual-ontology/
			online documentation|https://github.com/SynBioDex/SBOL-visual
		Removed:
			blog|https://www.facebook.com/SBOLstandards/
			help|https://github.com/SynBioDex/SBOL-visual/issues
			online documentation|https://sbolstandard.org/data-model-specification/
			online documentation|http://sbolstandard.org/sbol-glyph-thumbnails/
			online documentation|https://www.youtube.com/channel/UCrxKZNvDVabwGoxEOMZt_Qg

	'homepage' has been modified:
		Before: http://sbolstandard.org/visual/
		After: https://sbolstandard.org/visual-about/

	'dataProcesses' has been modified:
		Before:
		After:
			Download Specification, data release, https://sbolstandard.org/visual-specification/
		Added:
			Download Specification, data release, https://sbolstandard.org/visual-specification/
		Removed:

	'onto_domains' has been modified:
		Before:
			DNA sequence
			Nucleic acid design
			Sequence annotation
		After:
			DNA sequence
			Nucleic acid design
			Sequence annotation
			modeling and simulation objective
		Added:
			modeling and simulation objective
		Removed:

Edits to 'https://fairsharing.org/FAIRsharing.dg76vs' by 'The FAIRsharing Team' at 17:54, 16 Dec 2019 (approved):

	'supportLinks' has been modified:
		Before:
			help|https://github.com/SynBioDex/SBOL-visual/issues
			online documentation|http://sbolstandard.org/data-model-specifications/
			online documentation|http://sbolstandard.org/sbol-glyph-thumbnails/
		After:
			blog|https://www.facebook.com/SBOLstandards/
			help|https://github.com/SynBioDex/SBOL-visual/issues
			online documentation|https://sbolstandard.org/data-model-specification/
			online documentation|http://sbolstandard.org/sbol-glyph-thumbnails/
			online documentation|https://www.youtube.com/channel/UCrxKZNvDVabwGoxEOMZt_Qg
			twitter|@SBOLstandard
		Added:
			blog|https://www.facebook.com/SBOLstandards/
			online documentation|https://sbolstandard.org/data-model-specification/
			online documentation|https://www.youtube.com/channel/UCrxKZNvDVabwGoxEOMZt_Qg
			twitter|@SBOLstandard
		Removed:
			online documentation|http://sbolstandard.org/data-model-specifications/

	'miriam_id' has been modified:
		Before: None
		After:

In Collections

Computational Modeling (COMBINE)

The NormSys Registry for Modeling Standards

ISO/CD 20691 Collection - DRAFT

Systems Medicine

Support

General

forum	GitHub Issue Tracker
help	Examples from the Specification
help	Examples
online documentation	SBOL Visual Glyphs
online documentation	SBOL Visual Ontology
online documentation	GitHub Repository
twitter	@SBOLstandard

Additional Information

Contact

SBOL Editors

Tools

No tools defined

Schemas

No XSD schemas defined

Access / Retrieve Data

Conditions of Use

Applies to: Data use

Creative Commons Attribution 4.0 International (CC BY 4.0)

Data Release

Download Specification

https://sbolstandard.org/visual-specification/

Publications

Improving Synthetic Biology Communication: Recommended Practices for Visual Depiction and Digital Submission of Genetic Designs.

Hillson NJ,Plahar HA,Beal J,Prithviraj R
ACS Synth Biol 2016

View Paper (PubMed) View Publication

SBOL Visual: A Graphical Language for Genetic Designs.

Quinn JY,Cox RS 3rd,Adler A,Beal J,Bhatia S,Cai Y,Chen J,Clancy K,Galdzicki M,Hillson NJ,Le Novere N,Maheshwari AJ,McLaughlin JA,Myers CJ,P U,Pocock M,Rodriguez C,Soldatova L,Stan GB,Swainston N,Wipat A,Sauro HM
PLoS Biol 2015

View Paper (PubMed) View Publication

Related Standards

Reporting Guidelines

Minimal Information Required In the Annotation of Models

Terminology Artifacts

No semantic standards defined

Models and Formats

Synthetic Biology Open Language

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined

Related Databases (1)

SynBioHub
SynBioHub is a design repository for people designing biological constructs. It enables DNA and protein designs to be uploaded, then provides a shareable link to allow others to view them. SynBioHub also facilitates searching for information about existing useful parts and designs by combining data from a variety of sources.

Implementing Policies

This record is not implemented by any policy.

Credit

Record Maintainer

This record is maintained by sboleditors

Funds

Engineering and Physical Sciences Research Council (EPSRC), UK (Government body)
National Science Foundation (NSF), USA (Government body)

Grant Number(s)

1355909 (National Science Foundation (NSF), USA)
1356401 (National Science Foundation (NSF), USA)
EP/J02175X/1 (Engineering and Physical Sciences Research Council (EPSRC), UK)

Synthetic Biology Open Language Visual

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