How to cite this record
FAIRsharing.org: CSDB; Carbohydrate Structure Database; DOI: https://doi.org/10.25504/FAIRsharing.dkbt9j;
Last edited: Feb. 5, 2019, 12:05 p.m.; Last accessed: Apr 23 2019 11:12 a.m.
Publication for citation
Carbohydrate structure database merged from bacterial, archaeal, plant and fungal parts.
Toukach PV,Egorova KS; Nucleic Acids Res ;
2015;
10.1093/nar/gkv840;
Edits to 'https://fairsharing.org/FAIRsharing.dkbt9j' by 'The FAIRsharing Team' at 12:04, 05 Feb 2019 (approved):
'accessPoints' has been modified:
Before:
Other|http://csdb.glycoscience.ru/integration/make_rdf.php?id_list=1-10&mode=record&clean=1&db=bacterial&format=turtle|RDF
After:
Added:
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Other|http://csdb.glycoscience.ru/integration/make_rdf.php?id_list=1-10&mode=record&clean=1&db=bacterial&format=turtle|RDF
'supportLinks' has been modified:
Before:
contact form|http://csdb.glycoscience.ru/bacterial/core/feedback.php
email|netbox@toukach.ru
online documentation|http://csdb.glycoscience.ru/bacterial/core/help.php?db=bacterial&topic=extras
online documentation|http://csdb.glycoscience.ru/bacterial/core/help.php?db=bacterial&topic=dbdocs
After:
contact form|http://csdb.glycoscience.ru/bacterial/core/feedback.php
email|netbox@toukach.ru
help|http://csdb.glycoscience.ru/database/core/help.php?topic=examples
help|http://csdb.glycoscience.ru/database/core/help.php?db=database&topic=about
Added:
help|http://csdb.glycoscience.ru/database/core/help.php?topic=examples
help|http://csdb.glycoscience.ru/database/core/help.php?db=database&topic=about
Removed:
online documentation|http://csdb.glycoscience.ru/bacterial/core/help.php?db=bacterial&topic=extras
online documentation|http://csdb.glycoscience.ru/bacterial/core/help.php?db=bacterial&topic=dbdocs
'name' has been modified:
Before: Bacterial Carbohydrate Structure Database
After: Carbohydrate Structure Database
'onto_domains' has been modified:
Before:
Bibliography
Structure
Taxonomic classification
cross linking
curated information
nuclear magnetic resonance spectroscopy
structure
After:
Structure
carbohydrate
cross linking
curated information
nuclear magnetic resonance spectroscopy
structure
Added:
carbohydrate
Removed:
Bibliography
Taxonomic classification
'dataProcesses' has been modified:
Before:
manual and automated
(Sub)structure search
NMR structure ranking
NMR simulation
Taxonomy search
Bibliography search
NMR signal search
Composition search
Submit data
After:
manual and automated
(Sub)structure search
CSDB glycosyltransferase search
Taxonomy search
Bibliography search
NMR signal search
Composition search
Submit data
Added:
CSDB glycosyltransferase search
Removed:
NMR structure ranking
NMR simulation
'miriam_id' has been modified:
Before: None
After:
'publications' has been modified:
Before:
Sharing of worldwide distributed carbohydrate-related digital resources: online connection of the Bacterial Carbohydrate Structure DataBase and GLYCOSCIENCES.de|Ph. Toukach, H. Joshi, R. Ranzinger, Yu. Knirel, C.-W. von der Lieth|Nucleic Acids Res.|2007
Statistical analysis of the Bacterial Carbohydrate Structure Data Base (BCSDB): Characteristics and diversity of bacterial carbohydrates in comparison with mammalian glycans|S. Herget, Ph. Toukach, R. Ranzinger, W.E. Hull, Y. Knirel, C.-W. von der Lieth|BMC Struct. Biol.|2008
Bacterial Carbohydrate Structure Database 3: principles and realization|Ph. Toukach|J. Chem. Inf. Model.|2011
After:
Sharing of worldwide distributed carbohydrate-related digital resources: online connection of the Bacterial Carbohydrate Structure DataBase and GLYCOSCIENCES.de|Ph. Toukach, H. Joshi, R. Ranzinger, Yu. Knirel, C.-W. von der Lieth|Nucleic Acids Res.|2007
Statistical analysis of the Bacterial Carbohydrate Structure Data Base (BCSDB): Characteristics and diversity of bacterial carbohydrates in comparison with mammalian glycans|S. Herget, Ph. Toukach, R. Ranzinger, W.E. Hull, Y. Knirel, C.-W. von der Lieth|BMC Struct. Biol.|2008
Bacterial Carbohydrate Structure Database 3: principles and realization|Ph. Toukach|J. Chem. Inf. Model.|2011
Carbohydrate structure database merged from bacterial, archaeal, plant and fungal parts.|Toukach PV,Egorova KS|Nucleic Acids Res|2015
Added:
Carbohydrate structure database merged from bacterial, archaeal, plant and fungal parts.|Toukach PV,Egorova KS|Nucleic Acids Res|2015
Removed:
'shortname' has been modified:
Before: Bacterial Carbohydrate Structure Database
After: CSDB
'taxonomies' has been modified:
Before:
Archaea
Bacteria
After:
Algae
Archaea
Bacteria
Fungi
Plantae
Added:
Algae
Fungi
Plantae
Removed:
'tools' has been modified:
Before:
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Predict NMR||http://csdb.glycoscience.ru/database/core/nmrsim.html
NMR-based Structure Matching||http://csdb.glycoscience.ru/biopsel/grass_interface.php
Monomer and Dimer Abundance||http://csdb.glycoscience.ru/database/core/dimers.html
Glycome-based Taxon clustering||http://csdb.glycoscience.ru/integration/dsmatrix.php
Added:
Predict NMR||http://csdb.glycoscience.ru/database/core/nmrsim.html
NMR-based Structure Matching||http://csdb.glycoscience.ru/biopsel/grass_interface.php
Monomer and Dimer Abundance||http://csdb.glycoscience.ru/database/core/dimers.html
Glycome-based Taxon clustering||http://csdb.glycoscience.ru/integration/dsmatrix.php
Removed:
'description' has been modified:
Before: A manually curated database covering nearly all published data on primary structures of saccharides, glycoconjugates and their derivatives found in bacteria.
After: The Carbohydrate Structure Database (CSDB) contains manually curated natural carbohydrate structures, taxonomy, bibliography, NMR data and more. The Bacterial (BCSDB) and Plant&Fungal (PFCSDB) databases were merged in 2015, becoming the CSDB, to improve the quality of content-dependent services, such as taxon clustering and NMR simulation.
Edits to 'https://fairsharing.org/FAIRsharing.dkbt9j' by 'The FAIRsharing Team' at 13:51, 05 Dec 2016 (approved):
'shortname' has been modified:
Before: Bacterial Carbohydrate Structure Database
After: Tools have changed: Previous values: (Sub)structure search NMR structure ranking NMR simulation Taxonomy search Bibliography search NMR signal search Composition search Submit data New values: Support links have changed: Previous values: http://csdb.glycoscience.ru/bacterial/core/feedback.php netbox@toukach.ru http://csdb.glycoscience.ru/bacterial/core/help.php?db=bacterial&topic=dbdocs http://csdb.http://csdb.glycoscience.ru/bacterial/core/help.php?db=bacterial&topic=usage http://csdb.glycoscience.ru/bacterial/core/help.php?db=bacterial&topic=extras New values: http://csdb.glycoscience.ru/bacterial/core/feedback.php netbox@toukach.ru http://csdb.glycoscience.ru/bacterial/core/help.php?db=bacterial&topic=dbdocs http://csdb.glycoscience.ru/bacterial/core/help.php?db=bacterial&topic=extras Data processes have changed: Previous values: manual and automated New values: manual and automated (Sub)structure search NMR structure ranking NMR simulation Taxonomy search Bibliography search NMR signal search Composition search Submit data
Carbohydrate Structure Database
