standards > model/format > DOI:10.25504/FAIRsharing.dpgp6t
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ready Stockholm Multiple Alignment Format

General Information
The "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu.


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How to cite this record Stockholm Multiple Alignment Format; Stockholm Multiple Alignment Format; DOI:; Last edited: Jan. 8, 2019, 1:28 p.m.; Last accessed: Sep 22 2020 10:25 p.m.

Record updated: Oct. 23, 2016, 7:58 p.m. by The FAIRsharing Team.

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Related Databases (1)
The Pfam database is a large collection of protein families, each represented by multiple sequence alignments and hidden Markov models (HMMs). Pfam also generates higher-level groupings of related entries, known as clans. A clan is a collection of Pfam entries which are related by similarity of sequence, structure or profile-HMM.

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