Stockholm Multiple Alignment Format
How to cite this record FAIRsharing.org: Stockholm Multiple Alignment Format; Stockholm Multiple Alignment Format; DOI: https://doi.org/10.25504/FAIRsharing.dpgp6t; Last edited: Jan. 8, 2019, 1:28 p.m.; Last accessed: May 21 2019 6:11 a.m.
Record updated: Oct. 23, 2016, 7:58 p.m. by The FAIRsharing Team.
Edits to 'https://fairsharing.org/FAIRsharing.dpgp6t' by 'The FAIRsharing Team' at 19:58, 23 Oct 2016 (approved): 'description' has been modified: Before: "Stockholm Multiple Alignment Format" is a standard, specialising in the fields described under "scope and data types", below. Until this entry is claimed, more information on this project can be found at http://sonnhammer.sbc.su.se/Stockholm.html. This text was generated automatically. If you work on the project responsible for "Stockholm Multiple Alignment Format" then please consider helping us by claiming this record and updating it appropriately. After: The "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu.
No guidelines defined
No semantic standards defined
Models and Formats
No syntax standards defined
No identifier schema standards defined
No metrics standards defined
The Pfam database is a large collection of protein families, each represented by multiple sequence alignments and hidden Markov models (HMMs). Pfam also generates higher-level groupings of related entries, known as clans. A clan is a collection of Pfam entries which are related by similarity of sequence, structure or profile-HMM.
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