standards > model/format > DOI:10.25504/FAIRsharing.dpgp6t


ready Stockholm Multiple Alignment Format


General Information
The "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu.



How to cite this record FAIRsharing.org: Stockholm Multiple Alignment Format; Stockholm Multiple Alignment Format; DOI: https://doi.org/10.25504/FAIRsharing.dpgp6t; Last edited: Feb. 22, 2018, 2:04 p.m.; Last accessed: Nov 19 2018 10:14 p.m.


Record updated: Oct. 23, 2016, 7:58 p.m. by The FAIRsharing Team.

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Implementing Databases (1)
Pfam
The Pfam database is a large collection of protein families, each represented by multiple sequence alignments and hidden Markov models (HMMs). Pfam also generates higher-level groupings of related entries, known as clans. A clan is a collection of Pfam entries which are related by similarity of sequence, structure or profile-HMM.

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