Stockholm Multiple Alignment Format
How to cite this record FAIRsharing.org: Stockholm Multiple Alignment Format; Stockholm Multiple Alignment Format; DOI: https://doi.org/10.25504/FAIRsharing.dpgp6t; Last edited: March 12, 2021, 3:23 p.m.; Last accessed: Oct 27 2021 3:01 p.m.
Record updated: Jan. 29, 2021, 5:07 p.m. by The FAIRsharing Team.
Edits to 'https://fairsharing.org/FAIRsharing.dpgp6t' by 'The FAIRsharing Team' at 17:07, 29 Jan 2021 (approved): 'supportLinks' has been modified: Before: online documentation|https://en.wikipedia.org/wiki/Stockholm_format After: online documentation|https://en.wikipedia.org/wiki/Stockholm_format online documentation|http://scikit-bio.org/docs/0.5.0/generated/skbio.io.format.stockholm.html Added: online documentation|http://scikit-bio.org/docs/0.5.0/generated/skbio.io.format.stockholm.html Removed: 'miriam_id' has been modified: Before: None After:
Edits to 'https://fairsharing.org/FAIRsharing.dpgp6t' by 'The FAIRsharing Team' at 19:58, 23 Oct 2016 (approved): 'description' has been modified: Before: "Stockholm Multiple Alignment Format" is a standard, specialising in the fields described under "scope and data types", below. Until this entry is claimed, more information on this project can be found at http://sonnhammer.sbc.su.se/Stockholm.html. This text was generated automatically. If you work on the project responsible for "Stockholm Multiple Alignment Format" then please consider helping us by claiming this record and updating it appropriately. After: The "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu.
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The Pfam database is a large collection of protein families, each represented by multiple sequence alignments and hidden Markov models (HMMs). Pfam also generates higher-level groupings of related entries, known as clans. A clan is a collection of Pfam entries which are related by similarity of sequence, structure or profile-HMM.
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