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NeuroMorpho.Org

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General Information

NeuroMorpho.Org is a centrally curated inventory of 3D digitally reconstructed neurons associated with peer-reviewed publications. The goal of NeuroMorpho.Org is to provide dense coverage of available reconstruction data for the neuroscience community.

Homepage http://neuromorpho.org/

Countries that developed this resource United States

Created in 2006

Taxonomic range

Metazoa

Knowledge Domains

Subjects

User-defined Tags

Data sharing

Digital reconstruction

Metadata standardization

In the following recommendations:

How to cite this record FAIRsharing.org: NeuroMorpho.Org; NeuroMorpho.Org; DOI: https://doi.org/10.25504/FAIRsharing.drcy7r; Last edited: Feb. 25, 2021, 12:03 p.m.; Last accessed: Oct 22 2021 4:23 p.m.

Publication for citation Mobilizing the base of neuroscience data: the case of neuronal morphologies. Ascoli GA.; Nat. Rev. Neurosci. ; 2006; 10.1038/nrn1885;

This record is maintained by neuromorpho

Record updated: Feb. 25, 2021, 11:45 a.m. by The FAIRsharing Team.

Show edit history

Edits to 'https://fairsharing.org/FAIRsharing.drcy7r' by 'The FAIRsharing Team' at 11:45, 25 Feb 2021 (approved):

	'organizations' has been modified:
		Before:
			Krasnow Institute for Advanced Study, Fairfax, VA, USA|https://krasnow.gmu.edu|Maintains
			Office of Naval Research (ONR), Arlington, VA, USA|https://www.onr.navy.mil/|Funds
			The National Academies of Sciences, Engineering, and Medicine|http://www.nationalacademies.org/|Maintains
			National Science Foundation (NSF), USA|https://www.nsf.gov/|Funds
			U.S. National Library of Medicine|https://www.nlm.nih.gov/|Funds
		After:
			Office of Naval Research (ONR), Arlington, VA, USA|https://www.onr.navy.mil/|Funds
			National Science Foundation (NSF), USA|https://www.nsf.gov/|Funds
			U.S. National Library of Medicine|https://www.nlm.nih.gov/|Funds
			Krasnow Institute for Advanced Study, Fairfax, VA, USA|https://krasnow.gmu.edu|Maintains
			The National Academies of Sciences, Engineering, and Medicine|http://www.nationalacademies.org/|Maintains,Funds
			George Mason University, Fairfax, VA, USA|https://www.gmu.edu/|Maintains
		Added:
			The National Academies of Sciences, Engineering, and Medicine|http://www.nationalacademies.org/|Maintains,Funds
			George Mason University, Fairfax, VA, USA|https://www.gmu.edu/|Maintains
		Removed:
			The National Academies of Sciences, Engineering, and Medicine|http://www.nationalacademies.org/|Maintains

	'supportLinks' has been modified:
		Before:
			FAQ|http://neuromorpho.org/neuroMorpho/myfaq.jsp
			contact form|http://neuromorpho.org/neuroMorpho/emailForm.jsp
			help|http://neuromorpho.org/neuroMorpho/main_help.jsp
			training|http://neuromorpho.org/neuroMorpho/main_help.jsp
			twitter|@NeuroMorphoOrg
		After:
			FAQ|http://neuromorpho.org/myfaq.jsp
			help|http://neuromorpho.org/main_help.jsp
			twitter|@NeuroMorphoOrg
		Added:
			FAQ|http://neuromorpho.org/myfaq.jsp
			help|http://neuromorpho.org/main_help.jsp
		Removed:
			FAQ|http://neuromorpho.org/neuroMorpho/myfaq.jsp
			contact form|http://neuromorpho.org/neuroMorpho/emailForm.jsp
			help|http://neuromorpho.org/neuroMorpho/main_help.jsp
			training|http://neuromorpho.org/neuroMorpho/main_help.jsp

	'description' has been modified:
		Before: NeuroMorpho.Org is a centrally curated inventory of digitally reconstructed neurons. The goal of NeuroMorpho.Org is to provide dense coverage of available reconstruction data for the neuroscience community. The database currently holds over 37,500 neurons.
		After: NeuroMorpho.Org is a centrally curated inventory of 3D digitally reconstructed neurons associated with peer-reviewed publications. The goal of NeuroMorpho.Org is to provide dense coverage of available reconstruction data for the neuroscience community. 

	'licences' has been modified:
		Before:
			Open Data Commons (ODC) Public Domain Dedication and Licence (PDDL) 1.0|http://opendatacommons.org/licenses/pddl/1.0/|Data
			Attribution required||Data
		After:
			NeuroMorpho Terms of Use|http://neuromorpho.org/useterm.jsp|Data
		Added:
			NeuroMorpho Terms of Use|http://neuromorpho.org/useterm.jsp|Data
		Removed:
			Open Data Commons (ODC) Public Domain Dedication and Licence (PDDL) 1.0|http://opendatacommons.org/licenses/pddl/1.0/|Data
			Attribution required||Data

	'onto_disciplines' has been modified:
		Before:
			Life Science
		After:
			Computational Neuroscience
			Neuroscience
		Added:
			Computational Neuroscience
			Neuroscience
		Removed:
			Life Science

	'onto_domains' has been modified:
		Before:
			Cell morphology
			neuron
		After:
			Cell morphology
			Structure
			neuron
			structure
		Added:
			Structure
			structure
		Removed:

	'miriam_id' has been modified:
		Before: None
		After: 

	'dataProcesses' has been modified:
		Before:
			Download, data access, http://neuromorpho.org/neuroMorpho/DownloadNeuronRelatedFiles.jsp
		After:
			Download via Cart, data release, http://neuromorpho.org/DownloadNeuronRelatedFiles.jsp
			Literature Search, data access, http://neuromorpho.org/LS.jsp
			Metadata Search, data access, http://neuromorpho.org/MetaData.jsp
			Morphometry Search, data access, http://neuromorpho.org/MorphometrySearch.jsp
			Keyword Search, data access, http://neuromorpho.org/KeywordSearch.jsp
			Ontology Search, data access, http://neuromorpho.org/OntoSearch.jsp
			Interactive 3d Visualization, data access, http://neuromorpho.org/LS_Video.jsp
			Browse Random Neurons, data access, http://neuromorpho.org/byRandom.jsp
			Browse by Lab, data access, http://neuromorpho.org/bylab.jsp
			Browse by Cell Type, data access, http://neuromorpho.org/bycell.jsp
			Browse by Brain Region, data access, http://neuromorpho.org/byregion.jsp
			Browse by Species, data access, http://neuromorpho.org/byspecies.jsp
		Added:
			Download via Cart, data release, http://neuromorpho.org/DownloadNeuronRelatedFiles.jsp
			Literature Search, data access, http://neuromorpho.org/LS.jsp
			Metadata Search, data access, http://neuromorpho.org/MetaData.jsp
			Morphometry Search, data access, http://neuromorpho.org/MorphometrySearch.jsp
			Keyword Search, data access, http://neuromorpho.org/KeywordSearch.jsp
			Ontology Search, data access, http://neuromorpho.org/OntoSearch.jsp
			Interactive 3d Visualization, data access, http://neuromorpho.org/LS_Video.jsp
			Browse Random Neurons, data access, http://neuromorpho.org/byRandom.jsp
			Browse by Lab, data access, http://neuromorpho.org/bylab.jsp
			Browse by Cell Type, data access, http://neuromorpho.org/bycell.jsp
			Browse by Brain Region, data access, http://neuromorpho.org/byregion.jsp
			Browse by Species, data access, http://neuromorpho.org/byspecies.jsp
		Removed:
			Download, data access, http://neuromorpho.org/neuroMorpho/DownloadNeuronRelatedFiles.jsp

	'accessPoints' has been modified:
		Before:
		After:
			REST|http://neuromorpho.org/api.jsp|NeuroMorpho API Documentation and Access
		Added:
			REST|http://neuromorpho.org/api.jsp|NeuroMorpho API Documentation and Access
		Removed:

	'tools' has been modified:
		Before:
			search||http://neuromorpho.org/neuroMorpho/MetaData.jsp
		After:
		Added:
		Removed:
			search||http://neuromorpho.org/neuroMorpho/MetaData.jsp

In Collections

NIH-supported data repositories

Data Citation Implementation

Open Science Prize

Support

General

FAQ	NeuroMorpho FAQs
help	Quick Start
twitter	@NeuroMorphoOrg

Additional Information

Contact

NeuroMorpho Admin

Tools

No tools defined

Access / Retrieve Data

Conditions of Use

Applies to: Data use

NeuroMorpho Terms of Use

Data Release

Download via Cart

http://neuromorpho.org/DownloadNeuronRelatedFiles.jsp

Data Access

Literature Search	http://neuromorpho.org/LS.jsp
Metadata Search	http://neuromorpho.org/MetaData.jsp
Morphometry Search	http://neuromorpho.org/MorphometrySearch.jsp
Keyword Search	http://neuromorpho.org/KeywordSearch.jsp
Ontology Search	http://neuromorpho.org/OntoSearch.jsp
Interactive 3d Visualization	http://neuromorpho.org/LS_Video.jsp
Browse Random Neurons	http://neuromorpho.org/byRandom.jsp
Browse by Lab	http://neuromorpho.org/bylab.jsp
Browse by Cell Type	http://neuromorpho.org/bycell.jsp
Browse by Brain Region	http://neuromorpho.org/byregion.jsp
Browse by Species	http://neuromorpho.org/byspecies.jsp

REST Web Services

NeuroMorpho API Documentation and Access

http://neuromorpho.org/api.jsp

Publications

The importance of metadata to assess information content in digital reconstructions of neuronal morphology.

Parekh R., Armananzas R., Ascoli GA.
Cell and Tissue Research 2015

View Paper (PubMed)

Mobilizing the base of neuroscience data: the case of neuronal morphologies.

Ascoli GA.
Nat. Rev. Neurosci. 2006

View Paper (PubMed) View Publication

Quantitative investigations of axonal and dendritic arbors: development, structure, function, and pathology

Parekh R, Ascoli GA
Neuroscientist 2014

View Paper (PubMed)

Neuronal morphology goes digital: A research hub for cellular and system neuroscience.

Parekh R, Ascoli GA
Neuron 2013

View Paper (PubMed)

Digital reconstructions of neuronal morphology: three decades of research trends

Halavi M, Hamilton KA, Parekh R, Ascoli GA.
Frontiers in Neuroscience 2012

View Paper (PubMed)

Doubling up on the Fly: NeuroMorpho.Org Meets Big Data

Nanda S, Allaham MM, Bergamino M, Polavaram S, Armañanzas R, Ascoli GA, Parekh R.
Neuroinformatics 2015

View Paper (PubMed)

NeuroMorpho.Org implementation of digital neuroscience: dense coverage and integration with the NIF.

Halavi M,Polavaram S,Donohue DE,Hamilton G,Hoyt J,Smith KP,Ascoli GA
Neuroinformatics 2008

View Paper (PubMed) View Publication

Related Standards

Reporting Guidelines

Common Metadata Elements for Cataloging Biomedical Datasets

Terminology Artifacts

Models and Formats

No syntax standards defined

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined

Related Databases

Implementing Policies

Credit

Record Maintainer

This record is maintained by neuromorpho

Funds

Office of Naval Research (ONR), Arlington, VA, USA (Government body)
National Science Foundation (NSF), USA (Government body)
U.S. National Library of Medicine (Government body)
The National Academies of Sciences, Engineering, and Medicine

Maintains

Krasnow Institute for Advanced Study, Fairfax, VA, USA (Government body)
The National Academies of Sciences, Engineering, and Medicine
George Mason University, Fairfax, VA, USA (University) Lead

Grant Number(s)

Keck NAKFI (The National Academies of Sciences, Engineering, and Medicine)
NSF DBI 1546335 (BRAIN EAGER) (National Science Foundation (NSF), USA)
ONR MURI N00014-10-1-0198 (Office of Naval Research (ONR), Arlington, VA, USA)
R01 NS086082 (U.S. National Library of Medicine)
R01 NS39600 (U.S. National Library of Medicine)

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