PRoteomics IDEntifications database
Abbreviation:PRIDE
Homepage http://www.ebi.ac.uk/pride/
Developed in European Union
Created in 2004
Taxonomic range
Knowledge Domains BETA
Subjects BETA
In the following recommendations:
How to cite this record FAIRsharing.org: PRIDE; PRoteomics IDEntifications database; DOI: https://doi.org/10.25504/FAIRsharing.e1byny; Last edited: Jan. 9, 2019, 1:43 p.m.; Last accessed: Mar 19 2019 9:07 p.m.
Publication for citation 2016 update of the PRIDE database and its related tools. Vizcaino JA,Csordas A,del-Toro N,Dianes JA,Griss J,Lavidas I,Mayer G,Perez-Riverol Y,Reisinger F,Ternent T,Xu QW,Wang R,Hermjakob H; Nucleic Acids Res ; 2015; 10.1093/nar/gkv1145;
Record updated: Jan. 9, 2019, 1:43 p.m. by The FAIRsharing Team.
| FAQ | PRIDE FAQ |
| help | Help Pages |
| training | PRIDE Training |
| @pride_ebi |
Additional Information
| Contact | General contact |
| Identifiers.org | MIR:00000065 |
TeSS training resources
Pride and proteomexchange webinar
PRIDE and ProteomeXchange: webinar
| PRIDE Inspector | https://github.com/PRIDE-Toolsuite/pride-inspector |
| PRIDE Toolsuite | https://github.com/PRIDE-Toolsuite |
Conditions of Use
Applies to: Data useData Curation
| Submit | http://www.ebi.ac.uk/pride/help/archive/submission |
Data Access
| Browse | http://www.ebi.ac.uk/pride/archive/simpleSearch |
| Download | ftp://ftp.pride.ebi.ac.uk/pride/data/archive |
REST Web Services
| PRIDE Archive RESTful web service API | http://www.ebi.ac.uk/pride/ws/archive/ |
PRIDE: a public repository of protein and peptide identifications for the proteomics community.
Jones P., Côté RG., Martens L., Quinn AF., Taylor CF., Derache W., Hermjakob H., Apweiler R.,
Nucleic Acids Res. 2006
The PRoteomics IDEntifications (PRIDE) database and associated tools: status in 2013.
Vizcaíno JA., Côté RG., Csordas A., Dianes JA., Fabregat A., Foster JM., Griss J., Alpi E., Birim M., Contell J., O'Kelly G., Schoenegger A., Ovelleiro D., Pérez-Riverol Y., Reisinger F., Ríos D., Wang R., Hermjakob H.,
Nucleic Acids Res. 2013
ProteomeXchange provides globally coordinated proteomics data submission and dissemination.
Vizcaíno JA, Deutsch EW, Wang R, Csordas A, Reisinger F, Ríos D, Dianes JA, Sun Z, Farrah T, Bandeira N, Binz PA, Xenarios I, Eisenacher M, Mayer G, Gatto L, Campos A, Chalkley RJ, Kraus HJ, Albar JP, Martinez-Bartolomé S, Apweiler R, Omenn GS, Martens L, Jones AR, Hermjakob H.
Nat Biotechnol. 2014
PRIDE: the proteomics identifications database.
Martens L,Hermjakob H,Jones P,Adamski M,Taylor C,States D,Gevaert K,Vandekerckhove J,Apweiler R
Proteomics 2005
PRIDE: new developments and new datasets.
Jones P,Cote RG,Cho SY,Klie S,Martens L,Quinn AF,Thorneycroft D,Hermjakob H
Nucleic Acids Res 2007
Using the Proteomics Identifications Database (PRIDE).
Martens L,Jones P,Cote R
Curr Protoc Bioinformatics 2008
How to submit MS proteomics data to ProteomeXchange via the PRIDE database.
Ternent T,Csordas A,Qi D,Gomez-Baena G,Beynon RJ,Jones AR,Hermjakob H,Vizcaino JA
Proteomics 2014
2016 update of the PRIDE database and its related tools.
Vizcaino JA,Csordas A,del-Toro N,Dianes JA,Griss J,Lavidas I,Mayer G,Perez-Riverol Y,Reisinger F,Ternent T,Xu QW,Wang R,Hermjakob H
Nucleic Acids Res 2015
Reporting Guidelines
Terminology Artifacts
No semantic standards defined
Models and Formats
Identifier Schemas
No identifier schema standards defined
Metrics
No metrics standards defined
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Record Maintainer
This record is maintained by prideebi
Funds
European Molecular Biology Laboratory (EMBL), Heidelberg, Germany (Research institute)
Biotechnology and Biological Sciences Research Council (BBSRC), UK (Government body)
The Wellcome Trust, UK (Charitable foundation)
Maintains
European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridgeshire, UK (Research institute) Lead
Grant Number(s)
BB/I00095X/1 (Biotechnology and Biological Sciences Research Council (BBSRC), UK)
BB/K01997X/1 (Biotechnology and Biological Sciences Research Council (BBSRC), UK)
BB/L024225/1 (Biotechnology and Biological Sciences Research Council (BBSRC), UK)
WT101477MA (The Wellcome Trust, UK)
