databases > DOI:10.25504/FAIRsharing.e1byny
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ready PRoteomics IDEntifications database

Abbreviation:PRIDE

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General Information
The PRIDE PRoteomics IDEntifications database is a centralized, standards compliant, public data repository that provides protein and peptide identifications together with supporting evidence.




How to cite this record FAIRsharing.org: PRIDE; PRoteomics IDEntifications database; DOI: https://doi.org/10.25504/FAIRsharing.e1byny; Last edited: March 22, 2021, 1:23 p.m.; Last accessed: Oct 20 2021 1:53 a.m.

Publication for citation  The PRIDE database and related tools and resources in 2019: improving support for quantification data. Perez-Riverol Y,Csordas A,Bai J,Bernal-Llinares M,Hewapathirana S,Kundu DJ,Inuganti A,Griss J,Mayer G,Eisenacher M,Perez E,Uszkoreit J,Pfeuffer J,Sachsenberg T,Yilmaz S,Tiwary S,Cox J,Audain E,Walzer M,Jarnuczak AF,Ternent T,Brazma A,Vizcaino JA; Nucleic Acids Res ; 2018; 10.1093/nar/gky1106;


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Record updated: March 22, 2021, 11:46 a.m. by The FAIRsharing Team.

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Publications

PRIDE: a public repository of protein and peptide identifications for the proteomics community.

Jones P., Côté RG., Martens L., Quinn AF., Taylor CF., Derache W., Hermjakob H., Apweiler R.,
Nucleic Acids Res. 2006

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The PRoteomics IDEntifications (PRIDE) database and associated tools: status in 2013.

Vizcaíno JA., Côté RG., Csordas A., Dianes JA., Fabregat A., Foster JM., Griss J., Alpi E., Birim M., Contell J., O'Kelly G., Schoenegger A., Ovelleiro D., Pérez-Riverol Y., Reisinger F., Ríos D., Wang R., Hermjakob H.,
Nucleic Acids Res. 2013

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ProteomeXchange provides globally coordinated proteomics data submission and dissemination.

Vizcaíno JA, Deutsch EW, Wang R, et al.
Nat Biotechnol. 2014

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PRIDE: the proteomics identifications database.

Martens L,Hermjakob H,Jones P,Adamski M,Taylor C,States D,Gevaert K,Vandekerckhove J,Apweiler R
Proteomics 2005

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PRIDE: new developments and new datasets.

Jones P,Cote RG,Cho SY,Klie S,Martens L,Quinn AF,Thorneycroft D,Hermjakob H
Nucleic Acids Res 2007

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Using the Proteomics Identifications Database (PRIDE).

Martens L,Jones P,Cote R
Curr Protoc Bioinformatics 2008

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How to submit MS proteomics data to ProteomeXchange via the PRIDE database.

Ternent T,Csordas A,Qi D,Gomez-Baena G,Beynon RJ,Jones AR,Hermjakob H,Vizcaino JA
Proteomics 2014

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2016 update of the PRIDE database and its related tools.

Vizcaino JA,Csordas A,del-Toro N,Dianes JA,Griss J,Lavidas I,Mayer G,Perez-Riverol Y,Reisinger F,Ternent T,Xu QW,Wang R,Hermjakob H
Nucleic Acids Res 2015

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The PRIDE database and related tools and resources in 2019: improving support for quantification data.

Perez-Riverol Y,Csordas A,Bai J,Bernal-Llinares M,Hewapathirana S,Kundu DJ,Inuganti A,Griss J,Mayer G,Eisenacher M,Perez E,Uszkoreit J,Pfeuffer J,Sachsenberg T,Yilmaz S,Tiwary S,Cox J,Audain E,Walzer M,Jarnuczak AF,Ternent T,Brazma A,Vizcaino JA
Nucleic Acids Res 2018

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  • BB/I00095X/1 (Biotechnology and Biological Sciences Research Council (BBSRC), UK)

  • BB/K01997X/1 (Biotechnology and Biological Sciences Research Council (BBSRC), UK)

  • BB/L024225/1 (Biotechnology and Biological Sciences Research Council (BBSRC), UK)

  • WT101477MA (The Wellcome Trust, UK)