PRoteomics IDEntifications database
Abbreviation:PRIDE
Homepage http://www.ebi.ac.uk/pride/
Countries that developed this resource European Union
Created in 2004
Taxonomic range
Knowledge Domains
Subjects
How to cite this record FAIRsharing.org: PRIDE; PRoteomics IDEntifications database; DOI: https://doi.org/10.25504/FAIRsharing.e1byny; Last edited: Jan. 9, 2019, 1:43 p.m.; Last accessed: May 27 2019 8:31 a.m.
Publication for citation 2016 update of the PRIDE database and its related tools. Vizcaino JA,Csordas A,del-Toro N,Dianes JA,Griss J,Lavidas I,Mayer G,Perez-Riverol Y,Reisinger F,Ternent T,Xu QW,Wang R,Hermjakob H; Nucleic Acids Res ; 2015; 10.1093/nar/gkv1145;
Record updated: Jan. 9, 2019, 1:43 p.m. by The FAIRsharing Team.
| FAQ | PRIDE FAQ |
| help | Help Pages |
| training | PRIDE Training |
| @pride_ebi |
Additional Information
| Contact | General contact |
| Identifiers.org | MIR:00000065 |
TeSS training resources
Pride and proteomexchange webinar
PRIDE and ProteomeXchange: webinar
| PRIDE Inspector | https://github.com/PRIDE-Toolsuite/pride-inspector |
| PRIDE Toolsuite | https://github.com/PRIDE-Toolsuite |
Conditions of Use
Applies to: Data useData Curation
| Submit | http://www.ebi.ac.uk/pride/help/archive/submission |
Data Access
| Browse | http://www.ebi.ac.uk/pride/archive/simpleSearch |
| Download | ftp://ftp.pride.ebi.ac.uk/pride/data/archive |
REST Web Services
| PRIDE Archive RESTful web service API | http://www.ebi.ac.uk/pride/ws/archive/ |
PRIDE: a public repository of protein and peptide identifications for the proteomics community.
Jones P., Côté RG., Martens L., Quinn AF., Taylor CF., Derache W., Hermjakob H., Apweiler R.,
Nucleic Acids Res. 2006
The PRoteomics IDEntifications (PRIDE) database and associated tools: status in 2013.
Vizcaíno JA., Côté RG., Csordas A., Dianes JA., Fabregat A., Foster JM., Griss J., Alpi E., Birim M., Contell J., O'Kelly G., Schoenegger A., Ovelleiro D., Pérez-Riverol Y., Reisinger F., Ríos D., Wang R., Hermjakob H.,
Nucleic Acids Res. 2013
ProteomeXchange provides globally coordinated proteomics data submission and dissemination.
Vizcaíno JA, Deutsch EW, Wang R, Csordas A, Reisinger F, Ríos D, Dianes JA, Sun Z, Farrah T, Bandeira N, Binz PA, Xenarios I, Eisenacher M, Mayer G, Gatto L, Campos A, Chalkley RJ, Kraus HJ, Albar JP, Martinez-Bartolomé S, Apweiler R, Omenn GS, Martens L, Jones AR, Hermjakob H.
Nat Biotechnol. 2014
PRIDE: the proteomics identifications database.
Martens L,Hermjakob H,Jones P,Adamski M,Taylor C,States D,Gevaert K,Vandekerckhove J,Apweiler R
Proteomics 2005
PRIDE: new developments and new datasets.
Jones P,Cote RG,Cho SY,Klie S,Martens L,Quinn AF,Thorneycroft D,Hermjakob H
Nucleic Acids Res 2007
Using the Proteomics Identifications Database (PRIDE).
Martens L,Jones P,Cote R
Curr Protoc Bioinformatics 2008
How to submit MS proteomics data to ProteomeXchange via the PRIDE database.
Ternent T,Csordas A,Qi D,Gomez-Baena G,Beynon RJ,Jones AR,Hermjakob H,Vizcaino JA
Proteomics 2014
2016 update of the PRIDE database and its related tools.
Vizcaino JA,Csordas A,del-Toro N,Dianes JA,Griss J,Lavidas I,Mayer G,Perez-Riverol Y,Reisinger F,Ternent T,Xu QW,Wang R,Hermjakob H
Nucleic Acids Res 2015
Reporting Guidelines
Terminology Artifacts
No semantic standards defined
Models and Formats
Identifier Schemas
No identifier schema standards defined
Metrics
No metrics standards defined
- Rockefeller University Press - Journal Of Experimental Medicine - Data Deposition
- Cell Press - Cell Metabolism - Information for Authors
- African Academy of Sciences Open Research Data Guidelines for Authors
- MNI Open Research
- Wellcome Open Research Data Guidelines
- Cell Press - Cancer Cell - Information for Authors
- National Academy of Sciences - Proceedings of the National Academy of Sciences - Editorial Policies
- Cell Press - Cell Stem Cell - Information for Authors
- Springer Nature Research Data Policy Type 1
- Open Research Data and Data Management Plans - Information for ERC grantees by the ERC Scientific Council
- Rockefeller University Press - Journal Of Cell Biology - Data Deposition
- Springer Nature - Research Data Policies
- F1000Research Data Policy
- Springer Nature Research Data Policy Type 4
- HRB Open Research
- GigaScience - Minimum Standards of Reporting Checklist
- Cell Press - Current Biology - Information for Authors
- Scientific Data Data Policy
- Cell Press - Neuron - Information for Authors
- UCL Child Open Health Research
- Cold Spring Harbor Lab Press - Genome Research
- Public Library of Science Recommended Data Repositories
- Cell Press - Cell - Information for Authors
- European Molecular Biology Organisation Press Recommended Databases and Data Standards
- Cell Press - Trends In Plant Science - Information for Authors
- Cell Press - Molecular Cell - Information for Authors
- Cell Press - Immunity - Information for Authors
- Springer Nature Research Data Policy Type 2 (for life sciences)
- BioMed Central - Minimum Standards of Reporting Checklist
- Cell Press - Cell Host & Microbe - Information for Authors
- Cell Press - Trends In Biochemical Sciences - Instructions for Authors
- Gates Open Research Data Guidelines
- Genetics & Genomics Next
- Springer Nature Research Data Policy Type 3
- Cell Press - Developmental Cell - Information for Authors
Record Maintainer
This record is maintained by prideebi
Funds
European Molecular Biology Laboratory (EMBL), Heidelberg, Germany (Research institute)
Biotechnology and Biological Sciences Research Council (BBSRC), UK (Government body)
The Wellcome Trust, UK (Charitable foundation)
Maintains
European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridgeshire, UK (Research institute) Lead
Grant Number(s)
BB/I00095X/1 (Biotechnology and Biological Sciences Research Council (BBSRC), UK)
BB/K01997X/1 (Biotechnology and Biological Sciences Research Council (BBSRC), UK)
BB/L024225/1 (Biotechnology and Biological Sciences Research Council (BBSRC), UK)
WT101477MA (The Wellcome Trust, UK)
