databases > DOI:10.25504/FAIRsharing.e1byny
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ready PRoteomics IDEntifications database

Abbreviation:PRIDE

Recommended
General Information
The PRIDE PRoteomics IDEntifications database is a centralized, standards compliant, public data repository that provides protein and peptide identifications together with supporting evidence.

Homepage http://www.ebi.ac.uk/pride/

Countries that developed this resource Austria , Belgium , Croatia , Czech Republic , Denmark , Finland , France , Germany , Greece , Hungary , Iceland , Israel , Italy , Lithuania , Luxembourg , Malta , Montenegro , Netherlands , Norway , Portugal , Republic of Ireland , Slovakia , Spain , Sweden , Switzerland , United Kingdom

Created in 2004

Taxonomic range





How to cite this record FAIRsharing.org: PRIDE; PRoteomics IDEntifications database; DOI: https://doi.org/10.25504/FAIRsharing.e1byny; Last edited: March 22, 2021, 1:23 p.m.; Last accessed: Oct 20 2021 1:53 a.m.

Publication for citation  The PRIDE database and related tools and resources in 2019: improving support for quantification data. Perez-Riverol Y,Csordas A,Bai J,Bernal-Llinares M,Hewapathirana S,Kundu DJ,Inuganti A,Griss J,Mayer G,Eisenacher M,Perez E,Uszkoreit J,Pfeuffer J,Sachsenberg T,Yilmaz S,Tiwary S,Cox J,Audain E,Walzer M,Jarnuczak AF,Ternent T,Brazma A,Vizcaino JA; Nucleic Acids Res ; 2018; 10.1093/nar/gky1106;


This record is maintained by prideebi

Record updated: March 22, 2021, 11:46 a.m. by The FAIRsharing Team.

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In Collections
Data Citation Implementation
EOSC-Life
ELIXIR Core Data Resources and Deposition Databases

Support

General

FAQ PRIDE FAQ
help Help Pages
help Documentation
training PRIDE Training
twitter @pride_ebi

Additional Information

Contact General contact

TeSS training resources 

Pride and proteomexchange webinar

PRIDE and ProteomeXchange: webinar




Access / Retrieve Data

Conditions of Use

Applies to: Data use

Data Release

Download ftp://ftp.pride.ebi.ac.uk/pride/data/archive

Data Curation

Submit http://www.ebi.ac.uk/pride/help/archive/submission

Data Access

Search Archive https://www.ebi.ac.uk/pride/
Search Spectra https://www.ebi.ac.uk/pride/archive/spectra
Peptidome https://www.ebi.ac.uk/pride/peptidome
Search Spectral Libraries https://www.ebi.ac.uk/pride/spectrumlibrary

REST Web Services

PRIDE Archive RESTful web service API http://www.ebi.ac.uk/pride/ws/archive/


Publications

PRIDE: a public repository of protein and peptide identifications for the proteomics community.

Jones P., Côté RG., Martens L., Quinn AF., Taylor CF., Derache W., Hermjakob H., Apweiler R.,
Nucleic Acids Res. 2006

View Paper (PubMed) View Publication

The PRoteomics IDEntifications (PRIDE) database and associated tools: status in 2013.

Vizcaíno JA., Côté RG., Csordas A., Dianes JA., Fabregat A., Foster JM., Griss J., Alpi E., Birim M., Contell J., O'Kelly G., Schoenegger A., Ovelleiro D., Pérez-Riverol Y., Reisinger F., Ríos D., Wang R., Hermjakob H.,
Nucleic Acids Res. 2013

View Paper (PubMed) View Publication

ProteomeXchange provides globally coordinated proteomics data submission and dissemination.

Vizcaíno JA, Deutsch EW, Wang R, et al.
Nat Biotechnol. 2014

View Paper (PubMed) View Publication

PRIDE: the proteomics identifications database.

Martens L,Hermjakob H,Jones P,Adamski M,Taylor C,States D,Gevaert K,Vandekerckhove J,Apweiler R
Proteomics 2005

View Paper (PubMed) View Publication

PRIDE: new developments and new datasets.

Jones P,Cote RG,Cho SY,Klie S,Martens L,Quinn AF,Thorneycroft D,Hermjakob H
Nucleic Acids Res 2007

View Paper (PubMed) View Publication

Using the Proteomics Identifications Database (PRIDE).

Martens L,Jones P,Cote R
Curr Protoc Bioinformatics 2008

View Paper (PubMed) View Publication

How to submit MS proteomics data to ProteomeXchange via the PRIDE database.

Ternent T,Csordas A,Qi D,Gomez-Baena G,Beynon RJ,Jones AR,Hermjakob H,Vizcaino JA
Proteomics 2014

View Paper (PubMed) View Publication

2016 update of the PRIDE database and its related tools.

Vizcaino JA,Csordas A,del-Toro N,Dianes JA,Griss J,Lavidas I,Mayer G,Perez-Riverol Y,Reisinger F,Ternent T,Xu QW,Wang R,Hermjakob H
Nucleic Acids Res 2015

View Paper (PubMed) View Publication

The PRIDE database and related tools and resources in 2019: improving support for quantification data.

Perez-Riverol Y,Csordas A,Bai J,Bernal-Llinares M,Hewapathirana S,Kundu DJ,Inuganti A,Griss J,Mayer G,Eisenacher M,Perez E,Uszkoreit J,Pfeuffer J,Sachsenberg T,Yilmaz S,Tiwary S,Cox J,Audain E,Walzer M,Jarnuczak AF,Ternent T,Brazma A,Vizcaino JA
Nucleic Acids Res 2018

View Paper (PubMed) View Publication



Implementing Policies

Credit

Record Maintainer

Funds

Maintains

Grant Number(s)

  • BB/I00095X/1 (Biotechnology and Biological Sciences Research Council (BBSRC), UK)

  • BB/K01997X/1 (Biotechnology and Biological Sciences Research Council (BBSRC), UK)

  • BB/L024225/1 (Biotechnology and Biological Sciences Research Council (BBSRC), UK)

  • WT101477MA (The Wellcome Trust, UK)