ImMunoGeneTics Human Leukocyte Antigen Sequence Database

Abbreviation:IPD-IMGT/HLA

General Information

The IPD-IMGT/HLA Database provides a specialist database for sequences of the human major histocompatibility complex (MHC) and includes the official sequences named by the WHO Nomenclature Committee For Factors of the HLA System. The IMGT/HLA Database was established to provide a locus-specific database (LSDB) for the allelic sequences of the genes in the HLA system, also known as the human MHC. The IMGT/HLA Database was first released in 1998 and subsequently incorporated as a module of IPD in 2012.

Homepage http://www.ebi.ac.uk/ipd/imgt/hla/

Developed in United Kingdom

Created in 1998

Taxonomic range

Homo sapiens

Knowledge Domains BETA

Subjects BETA

How to cite this record FAIRsharing.org: IPD-IMGT/HLA; ImMunoGeneTics Human Leukocyte Antigen Sequence Database; DOI: https://doi.org/10.25504/FAIRsharing.e28v7g; Last edited: Jan. 14, 2019, 12:39 p.m.; Last accessed: Feb 15 2019 11:52 p.m.

Publication for citation The IPD and IMGT/HLA database: allele variant databases. Robinson J,Halliwell JA,Hayhurst JD,Flicek P,Parham P,Marsh SG; Nucleic Acids Res ; 2014; 10.1093/nar/gku1161;

Record updated: Jan. 14, 2019, 12:38 p.m. by The FAIRsharing Team.

Show edit history

Edits to 'https://fairsharing.org/FAIRsharing.e28v7g' by 'The FAIRsharing Team' at 12:38, 14 Jan 2019 (approved):

	'related_databases' has been modified:
		Before:
			Immuno-Polymorphism Database
			ImMunoGeneTics Information System
		After:
			Immuno-Polymorphism Database
			The European Searchable Tumour Line Database
			Human Platelet Antigens
			Killer-cell Immunoglobulin-like Receptors
			ImMunoGeneTics Information System
		Added:
			The European Searchable Tumour Line Database
			Human Platelet Antigens
			Killer-cell Immunoglobulin-like Receptors
		Removed:

	'supportLinks' has been modified:
		Before:
			FAQ|http://www.ebi.ac.uk/ipd/imgt/hla/help/faq.html
			contact form|http://www.ebi.ac.uk/support/hla.php
			email|hla@alleles.org
		After:
			FAQ|http://www.ebi.ac.uk/ipd/imgt/hla/help/faq.html
			contact form|http://www.ebi.ac.uk/support/hla.php
			email|hla@alleles.org
			help|https://www.ebi.ac.uk/ipd/imgt/hla/access.html
			online documentation|https://www.ebi.ac.uk/ipd/imgt/hla/nomenclature/index.html
			online documentation|https://www.ebi.ac.uk/ipd/imgt/hla/dpb.html
			online documentation|https://www.ebi.ac.uk/ipd/imgt/hla/intro.html
			online documentation|https://www.ebi.ac.uk/ipd/imgt/hla/citations.html
			online documentation|https://www.ebi.ac.uk/ipd/imgt/hla/stats.html
		Added:
			help|https://www.ebi.ac.uk/ipd/imgt/hla/access.html
			online documentation|https://www.ebi.ac.uk/ipd/imgt/hla/nomenclature/index.html
			online documentation|https://www.ebi.ac.uk/ipd/imgt/hla/dpb.html
			online documentation|https://www.ebi.ac.uk/ipd/imgt/hla/intro.html
			online documentation|https://www.ebi.ac.uk/ipd/imgt/hla/citations.html
			online documentation|https://www.ebi.ac.uk/ipd/imgt/hla/stats.html
		Removed:

	'name' has been modified:
		Before: Immuno Polymorphism Database - IMGT/HLA
		After: ImMunoGeneTics Human Leukocyte Antigen Sequence Database

	'licences' has been modified:
		Before:
			IPD-IMGT/HLA Licence and Disclaimer|https://www.ebi.ac.uk/ipd/imgt/hla/licence.html|Data
		After:
			IPD-IMGT/HLA Licence and Disclaimer|https://www.ebi.ac.uk/ipd/imgt/hla/licence.html|Data
			Creative Commons Attribution-NoDerivatives 4.0 International (CC BY-ND 4.0)|https://creativecommons.org/licenses/by-nd/4.0/|Data
		Added:
			Creative Commons Attribution-NoDerivatives 4.0 International (CC BY-ND 4.0)|https://creativecommons.org/licenses/by-nd/4.0/|Data
		Removed:

	'dataProcesses' has been modified:
		Before:
			Three monthly release cycle
			Data download (FTP)
			Allele Search
		After:
			Three monthly release cycle
			Data download (Release Archive)
			Data Download (FTP)
			Submission Tool
		Added:
			Data download (Release Archive)
			Data Download (FTP)
			Submission Tool
		Removed:
			Data download (FTP)
			Allele Search

	'miriam_id' has been modified:
		Before: None
		After: 

	'tools' has been modified:
		Before:
			BLAST Search||http://www.ebi.ac.uk/ipd/imgt/hla/blast.html
			Sequence Alignment Tool||http://www.ebi.ac.uk/ipd/imgt/hla/align.html
			Ambiguous Allele Combinations Search Tool|Beta|http://www.ebi.ac.uk/ipd/imgt/hla/ambig.html
			Cell Querying||http://www.ebi.ac.uk/ipd/imgt/hla/cell_query.html
		After:
			BLAST Search||http://www.ebi.ac.uk/ipd/imgt/hla/blast.html
			Sequence Alignment Tool||http://www.ebi.ac.uk/ipd/imgt/hla/align.html
			Ambiguous Allele Combinations Search Tool|Beta|http://www.ebi.ac.uk/ipd/imgt/hla/ambig.html
			Cell Querying||http://www.ebi.ac.uk/ipd/imgt/hla/cell_query.html
			HLA Dictionary||https://www.ebi.ac.uk/ipd/imgt/hla/dictionary.html
			Allele Query||https://www.ebi.ac.uk/ipd/imgt/hla/allele.html
		Added:
			HLA Dictionary||https://www.ebi.ac.uk/ipd/imgt/hla/dictionary.html
			Allele Query||https://www.ebi.ac.uk/ipd/imgt/hla/allele.html
		Removed:

Edits to 'https://fairsharing.org/FAIRsharing.e28v7g' by 'The FAIRsharing Team' at 13:55, 05 Dec 2016 (approved):

	'name' has been modified:
		Before: IPD-IMGT/HLA
		After: Immuno Polymorphism Database - IMGT/HLA

Edits to 'https://fairsharing.org/FAIRsharing.e28v7g' by 'The FAIRsharing Team' at 04:51, 05 Dec 2016 (approved):

	'contactName' has been modified:
		Before:
			
		After:
			Steven G. E. Marsh
		Added:
		Removed:

Support

General

FAQ	IMGT/HLA FAQ
contact form	IMGT/HLA Contact Form
support email	hla@alleles.org
help	Accessing the Database
online documentation	HLA Nomenclature
online documentation	DPB1 T-Cell Epitope Algorithms
online documentation	About IMGT/HLA
online documentation	Publications
online documentation	Statistics

Additional Information

Contact

Steven G. E. Marsh ORCID

Tools

BLAST Search	http://www.ebi.ac.uk/ipd/imgt/hla/blast.html
Sequence Alignment Tool	http://www.ebi.ac.uk/ipd/imgt/hla/align.html
Ambiguous Allele Combinations Search Tool	http://www.ebi.ac.uk/ipd/imgt/hla/ambig.html	Beta
Cell Querying	http://www.ebi.ac.uk/ipd/imgt/hla/cell_query.html
HLA Dictionary	https://www.ebi.ac.uk/ipd/imgt/hla/dictionary.html
Allele Query	https://www.ebi.ac.uk/ipd/imgt/hla/allele.html

Access / Retrieve Data

Conditions of Use

Applies to: Data use

Data Release

Three monthly release cycle

https://www.ebi.ac.uk/ipd/imgt/hla/docs/release.html

Data Curation

Submission Tool

https://www.ebi.ac.uk/ipd/imgt/hla/subs/submit.html

Data Access

Data download (Release Archive)	https://github.com/ANHIG/IMGTHLA
Data Download (FTP)	ftp://ftp.ebi.ac.uk/pub/databases/ipd/imgt/hla/

Publications

IMGT/HLA database--a sequence database for the human major histocompatibility complex.

Robinson J., Malik A., Parham P., Bodmer JG., Marsh SG.,
Tissue Antigens 2000