standards > terminology artifact > DOI:10.25504/FAIRsharing.e45arr


ready OntoBiotope


General Information
OntoBiotope is an ontology of microorganism habitats. Its modeling principle and its lexicon reflect the biotope classification used by biologists to describe microorganism isolation sites (e.g. GenBank, GOLD, ATCC). OntoBiotope is developed and maintained by the Meta-omics of Microbial Ecosystems (MEM) network in which 30 microbiologists from INRA (French National Institute for Agricultural Research) from all fields of applied microbiology participate. The relevance of OntoBiotope terms is evaluated through the PubMedBiotope semantic search engine. It identifies and categorizes microbial biotopes in all PubMed abstracts by applying the ToMap method (Text to Ontology Mapping) to the OntoBiotope ontology. It also indexes 3,35 millions relations between taxa and their habitats.

Homepage http://dx.doi.org/10.15454/1.4382640528105164E12

Countries that developed this resource France

Created in 2012

Taxonomic range




How to cite this record FAIRsharing.org: OntoBiotope; OntoBiotope; DOI: https://doi.org/10.25504/FAIRsharing.e45arr; Last edited: Jan. 8, 2019, 1:39 p.m.; Last accessed: Aug 22 2019 9:02 a.m.


This record is maintained by lovinra

Record added: Jan. 18, 2018, 3:41 p.m.
Record updated: May 23, 2018, 7:14 p.m. by The FAIRsharing Team.

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General

online documentation Agroportal link
online documentation About OntoBiotope

Additional Information

Contact Claire Nédellec   ORCID

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Applies to: Data use

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Download OBO Format http://dx.doi.org/10.15454/1.4382640528105164E12



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