standards > model/format > DOI:10.25504/FAIRsharing.eZ0fzl


ready Adaptive Immune Receptor Repertoire: Repertoire Schema

Abbreviation: AIRR Repertoire Schema


General Information
The Adaptive Immune Receptor Repertoire (AIRR) Repertoire Schema, part of the AIRR Data Model, describes an abstract organizational unit of analysis that is defined by the researcher and consists of study metadata, subject metadata, sample metadata, cell processing metadata, nucleic acid processing metadata, sequencing run metadata, a set of raw sequence files, data processing metadata, and a set of Rearrangements. A Repertoire gathers all of this information together into a composite object, which can be easily accessed by computer programs for data entry, analysis and visualization. The AIRR Repertoire Schema has been implemented in YAML/JSON, which provides a mechanism to share AIRR Repertoire metadata between research projects.



How to cite this record FAIRsharing.org: AIRR Repertoire Schema; Adaptive Immune Receptor Repertoire: Repertoire Schema; DOI: https://doi.org/10.25504/FAIRsharing.eZ0fzl; Last edited: Jan. 25, 2021, 4:29 p.m.; Last accessed: Jun 19 2021 5:29 a.m.

Publication for citation  AIRR Community Standardized Representations for Annotated Immune Repertoires. Vander Heiden JA,Marquez S,Marthandan N,Bukhari SAC,Busse CE,Corrie B,Hershberg U,Kleinstein SH,Matsen Iv FA,Ralph DK,Rosenfeld AM,Schramm CA,Christley S,Laserson U; Front Immunol ; 2018; 10.3389/fimmu.2018.02206;


This record is maintained by bcorrie  ORCID

Record added: Aug. 7, 2020, 8 p.m.
Record updated: Oct. 6, 2020, 10:47 a.m. by The FAIRsharing Team.

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No XSD schemas defined


Access / Retrieve Data


Publications

The ADC API: A Web API for the Programmatic Query of the AIRR Data Commons

Christley S, Aguiar A, Blanck G, Breden F, Bukhari S, Busse C, Jaglale J, Harikrishnan S., Laserson U, Peters B, Rocha A, Schramm C., Taylor S, Vander Heiden J, Zimonja B, Watson C., Corrie B, Cowell L
Frontiers in Big Data 2020

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AIRR Community Standardized Representations for Annotated Immune Repertoires.

Vander Heiden JA,Marquez S,Marthandan N,Bukhari SAC,Busse CE,Corrie B,Hershberg U,Kleinstein SH,Matsen Iv FA,Ralph DK,Rosenfeld AM,Schramm CA,Christley S,Laserson U
Front Immunol 2018

View Paper (PubMed) View Publication

Related Standards

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Related Databases (2)
iReceptor Public Archive
A data repository for the storage and sharing of Adaptive Immune Receptor Repertoire data. Primary public repository for the iReceptor Platform and Scientific Gateway.

VDJServer
VDJServer is a free, scalable resource for performing immune repertoire analysis and sharing data.

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