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Core Information for Metabolomics Reporting

Abbreviation: CIMR

Recommended

General Information

This document specifies the minimal guidelines reporting metabolomics work. It does so in a textual form and seeks in the long term to cover all application areas and analysis technologies.

Homepage https://github.com/MSI-Metabolomics-Standards-Initiative/CIMR/

Countries that developed this resource France , United Kingdom

Created in 2003

Taxonomic range

All

Knowledge Domains

Subjects

In the following recommendations:

How to cite this record FAIRsharing.org: CIMR; Core Information for Metabolomics Reporting; DOI: https://doi.org/10.25504/FAIRsharing.exz30t; Last edited: March 5, 2020, 10:17 a.m.; Last accessed: Jul 31 2021 11:50 p.m.

This record is maintained by salek ORCID

Record updated: March 5, 2020, 10:17 a.m. by The FAIRsharing Team.

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Edits to 'https://fairsharing.org/FAIRsharing.exz30t' by 'The FAIRsharing Team' at 10:17, 05 Mar 2020 (approved):

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			contact form|http://www.metabolomics-msi.org/contact-us.html
			online documentation|http://www.metabolomics-msi.org/
			twitter|@MetabolomicsSoc
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			forum|https://github.com/MSI-Metabolomics-Standards-Initiative/CIMR/issues
			twitter|@MetabolomicsSoc
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			forum|https://github.com/MSI-Metabolomics-Standards-Initiative/CIMR/issues
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			contact form|http://www.metabolomics-msi.org/contact-us.html
			online documentation|http://www.metabolomics-msi.org/

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			Download (PDF)
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Edits to 'https://fairsharing.org/FAIRsharing.exz30t' by 'salek' at 11:05, 17 Feb 2020 (approved):

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In Collections

Metabolomics Standards and Databases

H2020 Phenome and Metabolome aNalysis (PhenoMenal) Project

FAIRDOM Community Standards

Minimum Information for Biological and Biomedical Investigations

Chemistry

ISO/CD 20691 Collection - DRAFT

Support

General

forum	GitHub Issue Tracker
twitter	@MetabolomicsSoc

Additional Information

Contact

Reza Salek ORCID

Tools

No tools defined

Schemas

No XSD schemas defined

Access / Retrieve Data

Conditions of Use

Data Release

Download (PDF)

https://github.com/MSI-Metabolomics-Standards-Initiative/CIMR/

Publications

Minimum reporting standards for plant biology context information in metabolomic studies

Oliver Fiehn, Lloyd W. Sumner, Seung Y. Rhee, Jane Ward, Julie Dickerson, Bernd Markus Lange, Geoff Lane, Ute Roessner, Robert Last, Basil Nikolau
Metabolomics 2007

View Publication

Standard reporting requirements for biological samples in metabolomics experiments: environmental context

Norman Morrison, Dan Bearden, Jacob G. Bundy, Tim Collette, Felicity Currie, Matthew P. Davey, Nathan S. Haigh, David Hancock, Oliver A. H. Jones, Simone Rochfort, Susanna-Assunta Sansone, Dalibor Štys, Quincy Teng, Dawn Field, Mark R. Viant
Metabolomics 2007

View Publication

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

Nuclear Magnetic Resonance Controlled Vocabulary

Models and Formats

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined

Related Databases (2)

Plantmetabolomics.org
Arabidopsis metabolomics database which provides researchers with resources to investigate the function of genes and metabolites.

MetaboLights
MetaboLights is a database for metabolomics studies, their raw experimental data and associated metadata. The database is cross-species and cross-technique and it covers metabolite structures and their reference spectra as well as their biological roles and locations. MetaboLights is the recommended metabolomics repository for a number of leading journals and ELIXIR, the European infrastructure for life science information.

Implementing Policies

EMBO Press Recommended Databases and Data Standards

Credit

Record Maintainer

This record is maintained by salek ORCID

Maintains

COSMOS European Union FP7 (Government body)
Metabolomics Standards Initiative (MSI) (Consortium)

Core Information for Metabolomics Reporting

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