Ontology for Parasite LifeCycle

Abbreviation: OPL

General Information

OPL models the life cycle stage details of T.cruzi and two related kinetoplastids, Trypanosoma brucei and Leishmania major. In addition, the ontology also models necessary contextual details such as host information, vector information, strain and anatomical location. OPL is based on the Basic Formal Ontology (BFO) and follows the rules set by the OBO Foundry consortium.

Homepage http://wiki.knoesis.org/index.php/Ontology_for_Parasite_Life_Cycle

Countries that developed this resource United States

Created in 2011

Taxonomic range

Leishmania major

Trypanosoma brucei

Trypanosoma cruzi

Knowledge Domains

Subjects

How to cite this record FAIRsharing.org: OPL; Ontology for Parasite LifeCycle; DOI: https://doi.org/10.25504/FAIRsharing.ez2nhb; Last edited: June 10, 2019, 4:30 p.m.; Last accessed: Jan 19 2020 4:08 p.m.

Record updated: April 28, 2019, 11:53 a.m. by The FAIRsharing Team.

Show edit history

Edits to 'https://fairsharing.org/FAIRsharing.ez2nhb' by 'The FAIRsharing Team' at 11:53, 28 Apr 2019 (approved):

	'organizations' has been modified:
		Before:
			National Heart, Lung and Blood Institute (NHLBI), National Institutes of Health (NIH), Bethesda, MD, USA|http://www.nhlbi.nih.gov/|Funds
			Ohio Center of Excellence in Knowledge-enabled Computing (Kno.e.sis), Fairborn, OH, USA|http://knoesis.wright.edu|Maintains
		After:
			National Heart, Lung and Blood Institute (NHLBI), National Institutes of Health (NIH), Bethesda, MD, USA|http://www.nhlbi.nih.gov/|Funds
			Ohio Center of Excellence in Knowledge-enabled Computing (Kno.e.sis), Fairborn, OH, USA|http://knoesis.wright.edu|Maintains
			National Institutes of Health (NIH), Bethesda, MD, USA|http://www.nih.gov|Funds
			National Institute of Allergy and Infectious Diseases (NIAD), Bethesda, MD, USA|http://www.niaid.nih.gov/|Funds
			EVIMALAR network of excellence (EMBL)|https://www.embl.de/training/collaborative_training/evimalar/|Funds
			The Wellcome Trust, UK|https://wellcome.ac.uk/|Funds
		Added:
			National Institutes of Health (NIH), Bethesda, MD, USA|http://www.nih.gov|Funds
			National Institute of Allergy and Infectious Diseases (NIAD), Bethesda, MD, USA|http://www.niaid.nih.gov/|Funds
			EVIMALAR network of excellence (EMBL)|https://www.embl.de/training/collaborative_training/evimalar/|Funds
			The Wellcome Trust, UK|https://wellcome.ac.uk/|Funds
		Removed:

	'grants' has been modified:
		Before:
			1R01HL087795-01A1
		After:
			 5R01GM93132-1
			085822
			098051
			1R01HL087795-01A1
			242095
			HHSN272200900039C
		Added:
			 5R01GM93132-1
			085822
			098051
			242095
			HHSN272200900039C
		Removed:

	'supportLinks' has been modified:
		Before:
			email|support@knoesis.org
			help|https://github.com/OPL-ontology/OPL/issues
			online documentation|http://knoesis.wright.edu/trykipedia/parasitelifecycle
			online documentation|https://github.com/OPL-ontology/OPL
		After:
			email|support@knoesis.org
			help|https://github.com/OPL-ontology/OPL/issues
			online documentation|https://github.com/OPL-ontology/OPL
		Added:
		Removed:
			online documentation|http://knoesis.wright.edu/trykipedia/parasitelifecycle

	'onto_disciplines' has been modified:
		Before:
			Anatomy
			Developmental Biology
			Life Sciences
		After:
			Anatomy
			Developmental Biology
			Life Sciences
			Ontology and Terminology
		Added:
			Ontology and Terminology
		Removed:

	'onto_domains' has been modified:
		Before:
			life cycle
			life cycle stage
			parasite
		After:
			host role
			life cycle
			life cycle stage
			parasite
		Added:
			host role
		Removed:

Edits to 'https://fairsharing.org/FAIRsharing.ez2nhb' by 'The FAIRsharing Team' at 11:14, 22 Mar 2018 (approved):

	'related_databases' has been modified:
		Before:
		After:
			biodbcore-001083|OBO Foundry
		Added:
			biodbcore-001083|OBO Foundry
		Removed:

Edits to 'https://fairsharing.org/FAIRsharing.ez2nhb' by 'The FAIRsharing Team' at 11:11, 22 Mar 2018 (approved):

	'homepage' has been modified:
		Before: http://bioportal.bioontology.org/ontologies/1190
		After: http://wiki.knoesis.org/index.php/Ontology_for_Parasite_Life_Cycle

Support

General

support email	Kno.e.sis Support
help	OPL Issue Tracker
online documentation	OPL on GitHub

Additional Information

Contact

Priti Parikh

External Links

Bioportal	http://bioportal.bioontology.org/ontologies/OPL
OBO	http://obofoundry.org/ontology/opl.html

Tools

No tools defined

Schemas

No XSD schemas defined

Access / Retrieve Data

Conditions of Use

Data Release

Release Notes

https://github.com/OPL-ontology/OPL/wiki/ReleaseNotes

Publications

The Ontology for Parasite Lifecycle (OPL): towards a consistent vocabulary of lifecycle stages in parasitic organisms.

Parikh PP,Zheng J,Logan-Klumpler F,Stoeckert CJ Jr,Louis C,Topalis P,Protasio AV,Sheth AP,Carrington M,Berriman M,Sahoo SS
J Biomed Semantics 2012

View Paper (PubMed) View Publication

OPL Ontology Display

View in BioPortal.

Disclaimer: This widget assumes the availability of the ontology resources in the NCBO BioPortal.

View in OBO Foundry.

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

Models and Formats

No syntax standards defined

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined

Implementing Databases (1)

OBO Foundry
The Open Biological and Biomedical Ontology (OBO) Foundry is a collective of ontology developers that are committed to collaboration and adherence to shared principles. The mission of the OBO Foundry is to develop a family of interoperable ontologies that are both logically well-formed and scientifically accurate. To achieve this, OBO Foundry participants voluntarily adhere to and contribute to the development of an evolving set of principles including open use, collaborative development, non-overlapping and strictly-scoped content, and common syntax and relations, based on ontology models that work well, such as the Gene Ontology (GO). The OBO Foundry is overseen by an Operations Committee with Editorial, Technical and Outreach working groups.

Implementing Policies

This record is not implemented by any policy.

Credit

Record Maintainer

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Funds

National Heart, Lung and Blood Institute (NHLBI), National Institutes of Health (NIH), Bethesda, MD, USA (Government body)
National Institutes of Health (NIH), Bethesda, MD, USA (Government body)
National Institute of Allergy and Infectious Diseases (NIAD), Bethesda, MD, USA (Government body)
EVIMALAR network of excellence (EMBL)
The Wellcome Trust, UK (Charitable foundation)

Maintains

Ohio Center of Excellence in Knowledge-enabled Computing (Kno.e.sis), Fairborn, OH, USA (Research institute)

Grant Number(s)

5R01GM93132-1 (National Institutes of Health (NIH), Bethesda, MD, USA)
085822 (The Wellcome Trust, UK)
098051 (The Wellcome Trust, UK)
1R01HL087795-01A1 (National Heart, Lung and Blood Institute (NHLBI), National Institutes of Health (NIH), Bethesda, MD, USA)
242095 (EVIMALAR network of excellence (EMBL))
HHSN272200900039C (National Institute of Allergy and Infectious Diseases (NIAD), Bethesda, MD, USA)

Ontology for Parasite LifeCycle

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