Newick tree Format
Countries that developed this resource United States
Created in 1986
How to cite this record FAIRsharing.org: Newick tree Format; Newick tree Format; DOI: https://doi.org/10.25504/FAIRsharing.ezznsh; Last edited: Feb. 13, 2019, 9:33 a.m.; Last accessed: Jul 17 2019 4:07 p.m.
Record updated: Feb. 13, 2019, 9:32 a.m. by The FAIRsharing Team.
Edits to 'https://fairsharing.org/FAIRsharing.ezznsh' by 'The FAIRsharing Team' at 09:32, 13 Feb 2019 (approved): 'organizations' has been modified: Before: After: Department of Genome Sciences, University of Washington, Seattle, United States|http://www.gs.washington.edu/about/contact.htm|Maintains Added: Department of Genome Sciences, University of Washington, Seattle, United States|http://www.gs.washington.edu/about/contact.htm|Maintains Removed: 'supportLinks' has been modified: Before: online documentation|http://evolution.genetics.washington.edu/phylip/newick_doc.html online documentation|https://en.wikipedia.org/wiki/Newick_format After: wikipedia|https://en.wikipedia.org/wiki/Newick_format Added: wikipedia|https://en.wikipedia.org/wiki/Newick_format Removed: online documentation|http://evolution.genetics.washington.edu/phylip/newick_doc.html online documentation|https://en.wikipedia.org/wiki/Newick_format 'dataProcesses' has been modified: Before: After: Newick Format (Formal description) Added: Newick Format (Formal description) Removed: 'related_standards' has been modified: Before: After: CLUSTAL-W Alignment Format Added: CLUSTAL-W Alignment Format Removed: 'miriam_id' has been modified: Before: None After: 'onto_domains' has been modified: Before: Sequence dendrogram deoxyribonucleic acid After: Sequence dendrogram Added: Removed: deoxyribonucleic acid
Edits to 'https://fairsharing.org/FAIRsharing.ezznsh' by 'The FAIRsharing Team' at 09:47, 22 Oct 2016 (approved): 'description' has been modified: Before: "Newick tree Format" is a standard, specialising in the fields described under "scope and data types", below. Until this entry is claimed, more information on this project can be found at http://evolution.genetics.washington.edu/phylip/newicktree.html. This text was generated automatically. If you work on the project responsible for "Newick tree Format" then please consider helping us by claiming this record and updating it appropriately. After: The Newick Standard for representing trees in computer-readable form makes use of the correspondence between trees and nested parentheses, noticed in 1857 by the famous English mathematician Arthur Cayley.
No XSD schemas defined
Conditions of Use
|Newick Format (Formal description)||http://evolution.genetics.washington.edu/phylip/newick_doc.html|
No publications available
No guidelines defined
No semantic standards defined
Models and Formats
No identifier schema standards defined
No metrics standards defined
The Bacterial protein tYrosine Kinase database (BYKdb) contains computer-annotated BY-kinase sequences. The database web interface allows static and dynamic queries and provides integrated analysis tools including sequence annotation.
Virus Pathogen Database and Analysis Resource
The Virus Pathogen Database and Analysis Resource (ViPR) is an integrated repository of data and analysis tools for multiple virus families, supported by the National Institute of Allergy and Infectious Diseases (NIAID) Bioinformatics Resource Centers (BRC) program. ViPR captures various types of information, including sequence records, gene and protein annotations, 3D protein structures, immune epitope locations, clinical and surveillance metadata and novel data derived from comparative genomics analysis. The database is available without charge as a service to the virology research community to help facilitate the development of diagnostics, prophylactics and therapeutics for priority pathogens and other viruses.
Influenza Research Database
The Influenza Research Database (IRD) is a free, open, publicly-accessible resource funded by the U.S. National Institute of Allergy and Infectious Diseases through the Bioinformatics Resource Centers program. IRD provides a comprehensive, integrated database and analysis resource for influenza sequence, surveillance, and research data, including user-friendly interfaces for data retrieval, visualization, and comparative genomics analysis, together with personal login- protected ‘workbench’ spaces for saving data sets and analysis results. IRD integrates genomic, proteomic, immune epitope, and surveillance data from a variety of sources, including public databases, computational algorithms, external research groups, and the scientific literature.
PhylomeDB is a public database for complete catalogs of gene phylogenies (phylomes). Researchers are able to use this resource to visualise the history of genes with the available phylogentic trees and multiple sequence alignments.
Influenza Virus Resource
Influenza Virus Resource presents data obtained from the NIAID Influenza Genome Sequencing Project as well as from GenBank, combined with tools for flu sequence analysis, annotation and submission to GenBank. In addition, it provides links to other resources that contain flu sequences, publications and general information about flu viruses.
TreeBASE is a repository of phylogenetic information, specifically user-submitted phylogenetic trees and the data used to generate them. TreeBASE accepts all types of phylogenetic data (e.g., trees of species, trees of populations, trees of genes) representing all biotic taxa.
Scroll for more...
This record is not implemented by any policy.
This record is in need of a maintainer. If you login, you'll be able to claim this record.